PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00148862001

Common Name

GSBRNA2T00148862001, LOC106419662

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 236aa MW: 26526.7 Da PI: 5.2087

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00148862001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.2	4.3e-42	6	136	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 + GfrF Pt++elv +yL++++eg++ ++++vi+ +d+++veP++Lp +++++ ++w+fF++r++++a+g r++r+t sgyWkat GSBRNA2T00148862001 6 TTGFRFYPTEDELVEFYLRNQLEGRSgDSMHRVIPVLDVFEVEPSHLPDlageRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKAT 95 68*********************96667778**********9546666667888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g+ +v+sk+++ +g+kkt+vfy+grap+g kt+W m+ey+ GSBRNA2T00148862001 96 GSPGPVFSKDNRMIGVKKTMVFYTGRAPTGGKTKWKMNEYK 136 **************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-46	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	46.621	5	162	IPR003441	NAC domain
Pfam	PF02365	4.9E-23	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEEDLTTGFR FYPTEDELVE FYLRNQLEGR SGDSMHRVIP VLDVFEVEPS HLPDLAGERC 60 RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG 120 RAPTGGKTKW KMNEYKALDD RGNVSAIPKL RHEFSLCRVY VTSGSSRAFD RRPVGVRQTG 180 TMLTNDVAVA ETSFTVGTSP EISMSGGEHV DLSVDTEMVD GLTEPIWEWE QLNWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	6e-31	5	167	20	173	NAC domain-containing protein 19
3swm_B	6e-31	5	167	20	173	NAC domain-containing protein 19
3swm_C	6e-31	5	167	20	173	NAC domain-containing protein 19
3swm_D	6e-31	5	167	20	173	NAC domain-containing protein 19
3swp_A	6e-31	5	167	20	173	NAC domain-containing protein 19
3swp_B	6e-31	5	167	20	173	NAC domain-containing protein 19
3swp_C	6e-31	5	167	20	173	NAC domain-containing protein 19
3swp_D	6e-31	5	167	20	173	NAC domain-containing protein 19
3ulx_A	7e-31	2	136	12	139	Stress-induced transcription factor NAC1
4dul_A	7e-31	5	167	17	170	NAC domain-containing protein 19
4dul_B	7e-31	5	167	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00148862001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013715926.1	1e-174	NAC domain-containing protein 90 isoform X1
Swissprot	Q9FMR3	1e-143	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A397ZV63	1e-173	A0A397ZV63_BRACM; Uncharacterized protein
STRING	Bra006624.1-P	1e-171	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-134	NAC domain containing protein 90

Link Out ? help Back to Top
Entrez Gene	106419662

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]