PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00148479001
Common NameGSBRNA2T00148479001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 392aa    MW: 43116.4 Da    PI: 9.948
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00148479001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.4e-10327370548
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                          k  rrk+kNRe+A rsR+RK  ++ eLe ++++L +eN++L k+
  GSBRNA2T00148479001 327 KTHRRKIKNRESAARSRARKMLQTMELEAEAEKLRKENHELLKN 370
                          678************************************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-5323381IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.944325367IPR004827Basic-leucine zipper domain
PfamPF077166.6E-8325370IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.28E-8327370No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-10327370No hitNo description
CDDcd147072.22E-15329371No hitNo description
PROSITE patternPS000360330345IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDNNWNFKTM GTGPRGAMSR LPVSAPLSQQ GSLYSRTLDQ IQNNLGKDYG SMNMEELLMS  60
IYSAEGTQGV VPTNGVNEGL QRQGSITLPR ILSQKTVDEV WKYITEEEQH PSNDGGRTNI  120
PQIQKQPTLG DITLEQFLTR AVAIHHPSSI SGIPNTSLSV EFQQKPVVSD VLGNINTVPS  180
NIIHGPYLNT NVNGSTSGQE QKQHNPFQPQ QPIMSKPHGY GYGTHVAFTS DQVNAHGIRD  240
SYMETGDKSN HENNVTLVQS VAPAPGGAMG VEVCSQITPF PVLDGIPKIN AGSSIVSPFT  300
FTTTVSNSVR DRNRNNGIAA EKKLVEKTHR RKIKNRESAA RSRARKMLQT MELEAEAEKL  360
RKENHELLKN QGKEITNGSR KRLRRTKSNI Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00148479001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635514.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 8 isoform X2
TrEMBLA0A0D3BUS10.0A0A0D3BUS1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C2140.0A0A3P6C214_BRAOL; Uncharacterized protein
STRINGBo4g078610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156311417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42910.19e-84bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]