PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00147572001 | ||||||||
Common Name | GSBRNA2T00147572001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 279aa MW: 30652 Da PI: 6.8647 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 55.4 | 1.4e-17 | 122 | 168 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 lkr rr+++NRe+ArrsR+RK++ ++ Le v++L++eN++L k+l GSBRNA2T00147572001 122 LKRMRRMYSNRESARRSRRRKQEHLADLESQVDSLKGENTTLYKQLI 168 8*****************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.3E-12 | 119 | 183 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.3E-15 | 121 | 167 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.887 | 121 | 167 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.55E-12 | 122 | 169 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-12 | 123 | 167 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 126 | 141 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.5E-5 | 190 | 267 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MDGHTAKDTG MKRSASELAL QEYLTRVIPL EPSFDLKNQD HTGELRDRHL LSETLIPAGV 60 LLDAQSSICE NLSADSPVSA NKPEVRRRAR RTTSVSSHGH SDEEDAETEA GQAEMTNDPN 120 HLKRMRRMYS NRESARRSRR RKQEHLADLE SQVDSLKGEN TTLYKQLIDA TQLFRSAGTN 180 NRILKSDVET LRIKVKLAED LVARGSFTSS LNQLLQTHLS PSPQSINSLH YTGSTSPAVT 240 VHSDQSMFPG ITLSGQNSSS GLGNVSSEAV SCVSDIWP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 142 | RRSRRRKQ |
2 | 137 | 142 | SRRRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00147572001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013643700.1 | 0.0 | basic leucine zipper 9-like | ||||
Swissprot | Q9FUD3 | 1e-164 | BZIP9_ARATH; Basic leucine zipper 9 | ||||
TrEMBL | A0A397Z1X9 | 0.0 | A0A397Z1X9_BRACM; Uncharacterized protein | ||||
STRING | Bo7g096540.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6370 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-137 | basic leucine zipper 9 |
Publications ? help Back to Top | |||
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