PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00146790001

Common Name

GSBRNA2T00146790001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 267aa MW: 31741.6 Da PI: 9.8524

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00146790001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.4	2.4e-15	46	90	24	68
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 + ++k +W+ vs+++ erg+++sp+ C++k+++lnkr+kk++e++ GSBRNA2T00146790001 46 ALQRKSKWKFVSEVLFERGYHVSPQLCEDKFNDLNKRFKKLNENR 90 4599*************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.7E-11	46	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MPLTEQHKGE RENNSVSYDH EPSFSEEGGD GDDLSMDGGS RRKFAALQRK SKWKFVSEVL 60 FERGYHVSPQ LCEDKFNDLN KRFKKLNENR LNMHHDLALQ HSVKLAFRNI DDQESDDFRN 120 HQLERRTNRR KKDNIQYLIC LLFWAFWLIR PEHYLIFEQS RIYFATIVIR LTHLGFSPFF 180 SSIMNVLILS AFGFDAVHMV EIFYKALKFK RFSKASLYLD LRVSLAFKTS KKKVMFLFYL 240 SLHVPILVIL NPFYLQYHSN LFPFKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00146790001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A078FHU7	1e-116	A0A078FHU7_BRANA; BnaC07g13720D protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-28	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]