PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00145704001
Common NameGSBRNA2T00145704001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 241aa    MW: 26688 Da    PI: 6.2434
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00145704001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81e-121565148
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed +lvd  +  G     +W+ +++  g++R++k+c++rw +yl
  GSBRNA2T00145704001 15 KGPWTADEDGKLVDFLRTRGASggwCWRDVPKLAGLKRCGKSCRLRWTNYL 65
                         79******************99***************************97 PP
2Myb_DNA-binding56.94.9e-1871115147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +++eE +l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  GSBRNA2T00145704001  71 RGLFSEEEIQLVIDLHAQLGNR-WSKIAAELP-GRTDNDIKNYWNTH 115
                          7889******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17668IPR009057Homeodomain-like
PROSITE profilePS5129411.0371065IPR017930Myb domain
SuperFamilySSF466891.76E-2412112IPR009057Homeodomain-like
SMARTSM007172.1E-61467IPR001005SANT/Myb domain
PfamPF002493.5E-111565IPR001005SANT/Myb domain
CDDcd001674.55E-51765No hitNo description
PROSITE profilePS5129427.15566120IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2669121IPR009057Homeodomain-like
SMARTSM007172.3E-1770118IPR001005SANT/Myb domain
PfamPF002493.6E-1671115IPR001005SANT/Myb domain
CDDcd001672.20E-1374116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGGRKPCCDE VGLRKGPWTA DEDGKLVDFL RTRGASGGWC WRDVPKLAGL KRCGKSCRLR  60
WTNYLRPDLK RGLFSEEEIQ LVIDLHAQLG NRWSKIAAEL PGRTDNDIKN YWNTHIKRKL  120
IRMGIDPNTH SPFDQQKVNH QKEETTLVNG QDPPHQAEAP VGLQKATSAG NLTHLADVDG  180
DNIQPWSFLM ENNGGGCSSV GELTMLLSGD ITSSCSSSSS LWLKYGELGY EDLELGCFDD  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27131205108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00145704001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1990261e-128AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds.
GenBankAK1756871e-128AK175687.1 Arabidopsis thaliana mRNA for MYB99, complete cds, clone: RAFL22-21-A14.
GenBankAY5196441e-128AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds.
GenBankDQ4471051e-128DQ447105.1 Arabidopsis thaliana clone pENTR221-At5g62320 myb family transcription factor (At5g62320) mRNA, complete cds.
GenBankDQ6533901e-128DQ653390.1 Arabidopsis thaliana clone 0000017240_0000012066 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022568327.11e-179protein ODORANT1-like
SwissprotQ50EX63e-68ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D3BFT81e-174A0A0D3BFT8_BRAOL; Uncharacterized protein
STRINGBo3g107740.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.11e-126myb domain protein 99
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]