PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00144433001

Common Name

GSBRNA2T00144433001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1521aa MW: 171193 Da PI: 5.2989

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00144433001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.5e-08	1455	1509	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r+ WT+eE+e l+ +v+++ + W++I ++ ++Rt+ ++k++w++ GSBRNA2T00144433001 1455 RLFWTPEEEEMLKVGVEKFSAEakknmPWRKILEMGAevfhETRTPADLKDKWRN 1509 678***************************97655***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	5.28E-6	1204	1261	IPR011011	Zinc finger, FYVE/PHD-type
CDD	cd15489	0.00263	1211	1256	No hit	No description
PROSITE profile	PS50090	7.712	1450	1511	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.4E-8	1452	1511	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.47E-9	1453	1510	IPR009057	Homeodomain-like
SMART	SM00717	0.0017	1454	1513	IPR001005	SANT/Myb domain
CDD	cd11660	1.57E-10	1458	1509	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1521 aa Download sequence Send to blast
MATCIRKPSP NPEPPQLQTP RARSPLSENL SPSTTTFPRS PLSFISPHTL SPLKLSSPKL 60 VTPASLRTDD DDDEDEDMSI SSGSDALGGV NELLSDYDLD DDEVVRRYYD EEEVFGPTKP 120 TSKLNRGVLN DMNLRIEVPF ANGRVTDGES RLRRFALANS TPGSYLRDER PRTLSSKGSV 180 YWESNEDIGT PSAPPIMDIG EDDNIVELEK EIEQIEDEIC REAGVESHHQ QVNIGGLAGD 240 TVSHLYPEFS ESVRETQSEE AAQIEDISSD ELNCHSISGQ YAWQSLLAYD ACVRLCLYAW 300 SRGSSEAPEF LRDECRLLRG AFGLHKFLLQ PRGVRSTEES KNVKVEQKTP LKSKNVVRKL 360 RVEVRRLRLI PQRKLRGIDS LRSLMSTPMG AEYCRQVSSL VKTGMSSIKT ATLSAVSEEQ 420 FSCYLQMKST AEGDQVEQGS SVCLQSGTGS YHVFFPEPEG DALLIEVHDK KKSVQGKVTI 480 PMASLTDNPN ENVRWWPIYH GEQDCVGKIQ LFLGSTTSSD EDCHIKSAPV VETLAYDLLL 540 EAATRAQRFH AQNLRLNGSW KWLLSEFAEY YGVSDSYTKL RYLSHVMNVA TPTKTCLQLV 600 HELLVPILSA RSDKSLTRQE KSILMDCEIE IEKLLANVFE NYKSLDESCP SGLAHISGPV 660 QESASTALAP AVQIFCLLHD ILSPEGQEIL KNYLKTAAKK RCRKHMAETD EYVSSNSEGF 720 LLDSVTISTA YHKMKNLCLN ISNEIEADIK ITNEHVLPSS IDLSNIAAAV YSTLLCNRIR 780 AFLSAVPPSC PQPHVNELLI AVSDFERSLD SWGISPVHGG IDSRGLFHNY IMVWIHDMEL 840 RLLDRCKAEK VPWSGVITNH STSPFAEDMY ERIKDSLMEY EVVISRWPQY TLILENTASI 900 IERAIVKSLE KQYSEILTPL KDSIPKRLNL HVQKLTRRQS SALYSVPTQL GTFVNTIKRI 960 LDVLHQRVED ILRQWASCLP VVEDKKSLFG EQMNVITVLL RTKYRNYMQA AVDKLVSNTQ 1020 SNKTTRLKKI LEEIRENERE VEVRERMRML CSQITDSISN MHDVFTSQIF VASCRLFWDR 1080 MAQVVLKFLE GRKENEVGYK GSYYALGIVE DTFASEMQRL QGNSLQEKDM EAPRSMKDHR 1140 VLDRGALVLG KLDGEANQRF ASGEGPTHCV SGGAERVPDT FDERDVPSKK RHCLGTSETT 1200 IGGGGSNLEA CIVCDISDEG VSRCPGAGCI LWFHGECLNP DVGSSEDFAK TYCPYCWFRV 1260 LMMKDKSVRE KTVVAEKEVS KCLSKDHSVD GTDVVRDQEL GGEKDVCSSE KEQLQVEKDS 1320 DRSREEEMPL TEETGYQHQE DTEKFQDAEE DKDDEETTKD QTTGGAGGKG DVSGEEQDQS 1380 QQNEKPRRRR RQLILTCSEI SSDESTNERH GEGVTEQITG EMKNQQRKHS ATTQVAKSKT 1440 VRLDMSSLKM DQRKRLFWTP EEEEMLKVGV EKFSAEAKKN MPWRKILEMG AEVFHETRTP 1500 ADLKDKWRNR MGVRSAKKAS *

Sequence ? help Back to Top

Protein Sequence Length: 1521 aa Download sequence Send to blast

MATCIRKPSP NPEPPQLQTP RARSPLSENL SPSTTTFPRS PLSFISPHTL SPLKLSSPKL  60
VTPASLRTDD DDDEDEDMSI SSGSDALGGV NELLSDYDLD DDEVVRRYYD EEEVFGPTKP  120
TSKLNRGVLN DMNLRIEVPF ANGRVTDGES RLRRFALANS TPGSYLRDER PRTLSSKGSV  180
YWESNEDIGT PSAPPIMDIG EDDNIVELEK EIEQIEDEIC REAGVESHHQ QVNIGGLAGD  240
TVSHLYPEFS ESVRETQSEE AAQIEDISSD ELNCHSISGQ YAWQSLLAYD ACVRLCLYAW  300
SRGSSEAPEF LRDECRLLRG AFGLHKFLLQ PRGVRSTEES KNVKVEQKTP LKSKNVVRKL  360
RVEVRRLRLI PQRKLRGIDS LRSLMSTPMG AEYCRQVSSL VKTGMSSIKT ATLSAVSEEQ  420
FSCYLQMKST AEGDQVEQGS SVCLQSGTGS YHVFFPEPEG DALLIEVHDK KKSVQGKVTI  480
PMASLTDNPN ENVRWWPIYH GEQDCVGKIQ LFLGSTTSSD EDCHIKSAPV VETLAYDLLL  540
EAATRAQRFH AQNLRLNGSW KWLLSEFAEY YGVSDSYTKL RYLSHVMNVA TPTKTCLQLV  600
HELLVPILSA RSDKSLTRQE KSILMDCEIE IEKLLANVFE NYKSLDESCP SGLAHISGPV  660
QESASTALAP AVQIFCLLHD ILSPEGQEIL KNYLKTAAKK RCRKHMAETD EYVSSNSEGF  720
LLDSVTISTA YHKMKNLCLN ISNEIEADIK ITNEHVLPSS IDLSNIAAAV YSTLLCNRIR  780
AFLSAVPPSC PQPHVNELLI AVSDFERSLD SWGISPVHGG IDSRGLFHNY IMVWIHDMEL  840
RLLDRCKAEK VPWSGVITNH STSPFAEDMY ERIKDSLMEY EVVISRWPQY TLILENTASI  900
IERAIVKSLE KQYSEILTPL KDSIPKRLNL HVQKLTRRQS SALYSVPTQL GTFVNTIKRI  960
LDVLHQRVED ILRQWASCLP VVEDKKSLFG EQMNVITVLL RTKYRNYMQA AVDKLVSNTQ  1020
SNKTTRLKKI LEEIRENERE VEVRERMRML CSQITDSISN MHDVFTSQIF VASCRLFWDR  1080
MAQVVLKFLE GRKENEVGYK GSYYALGIVE DTFASEMQRL QGNSLQEKDM EAPRSMKDHR  1140
VLDRGALVLG KLDGEANQRF ASGEGPTHCV SGGAERVPDT FDERDVPSKK RHCLGTSETT  1200
IGGGGSNLEA CIVCDISDEG VSRCPGAGCI LWFHGECLNP DVGSSEDFAK TYCPYCWFRV  1260
LMMKDKSVRE KTVVAEKEVS KCLSKDHSVD GTDVVRDQEL GGEKDVCSSE KEQLQVEKDS  1320
DRSREEEMPL TEETGYQHQE DTEKFQDAEE DKDDEETTKD QTTGGAGGKG DVSGEEQDQS  1380
QQNEKPRRRR RQLILTCSEI SSDESTNERH GEGVTEQITG EMKNQQRKHS ATTQVAKSKT  1440
VRLDMSSLKM DQRKRLFWTP EEEEMLKVGV EKFSAEAKKN MPWRKILEMG AEVFHETRTP  1500
ADLKDKWRNR MGVRSAKKAS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.22183	0.0	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00144433001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP000372	1e-67	AP000372.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K23F3.
GenBank	CP002688	1e-67	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022543527.1	0.0	uncharacterized protein LOC111198718 isoform X2
TrEMBL	A0A3P5YMF5	0.0	A0A3P5YMF5_BRACM; Uncharacterized protein
STRING	Bra037494.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM810	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	3e-06	MYB_related family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]