PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144410001
Common NameGSBRNA2T00144410001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 491aa    MW: 53432.8 Da    PI: 7.3642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144410001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08307354455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSBRNA2T00144410001 307 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 354
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-9301358No hitNo description
SuperFamilySSF474592.75E-16301367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-16303368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5307354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDNELFMNTE LPPPSEMAMH FEQPSSSSAM LNWGLMDPNL ARNSPPQDCF MWEKSTEQQQ  60
SIFDSALSSL VSSPTPSNSN FSGGGGDGFI IRELIGKLGN IGNTSGDIYG APMNGNVSRS  120
ASCYATPMSS PPPMMNRTAP LTEFSGDPGF AERAAKFSCF GSRSFNGRTN SGIPVNNGKI  180
VNSGKLTRVS STPALKALAS PEFASASRPM IPAGDSPPKL PGEFSRKRKS VSKGKSKDNP  240
LPAASPSPSF SKTAERKEVS EEKGGKRRRE DEGEEEEGNK GGNDTKPPEP PKDYIHVRAR  300
RGQATDSHSL AERVRREKIG ERMKLLQDLV PGCNKVTGKA LMLDEIINYV QSLQRQVEFL  360
SMKLSSVNDT RLEFNVDALV SKDAMISSSG SRVHESGLRL ESLSHHNYNN NSQLHTNVSS  420
NNMMLHSPMK SLEPSALARG FTHLPTLTQF TDTISQYQMF SEEDLQSIVG MGVAHNPNHE  480
SQSQNMKIEL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229SRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.213950.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144410001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886101e-174AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0029451e-174BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056371e-174BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151653.10.0PREDICTED: transcription factor bHLH78 isoform X1
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLM4F8R60.0M4F8R6_BRARP; Uncharacterized protein
STRINGBra037478.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]