PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143293001
Common NameGSBRNA2T00143293001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 352aa    MW: 39786.4 Da    PI: 9.4123
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143293001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP702.7e-221176171
              E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                         rkeksL++l ++fl+l+++ + + + l+++a +L    v  +rRRiYD++N+Le+++l++++ kn+++w+g
  GSBRNA2T00143293001 11 RKEKSLGVLVSNFLRLYNRDDVDLIGLDDAAGKL---GV--ERRRIYDVVNILESIGLVARRGKNQYSWRG 76
                         79*****************999************...**..****************************98 PP
2E2F_TDP77.21.6e-24136216171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          +keksL++l+q+f+kl+ +s+++ +tl+ ++k+L++      ++++k+RR+YDi+NV++++nliek     ++k+++rw g
  GSBRNA2T00143293001 136 KKEKSLWVLAQNFVKLFLCSDDDLITLDGATKALLNVsqdpmNMRTKVRRLYDIANVFSSMNLIEKthipeTKKPAYRWLG 216
                          69********************************887999******************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-23777IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.32E-151074IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.0E-261176IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-181276IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-21134218IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-28136216IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.8E-19137216IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.44E-12138217IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MESLGRQSYS RKEKSLGVLV SNFLRLYNRD DVDLIGLDDA AGKLGVERRR IYDVVNILES  60
IGLVARRGKN QYSWRGFGQV PPVLSLLKEE GMREKFGIIP CVTNSEMVLY DQVREEPLKL  120
SPDDQENSPS PKLDSKKEKS LWVLAQNFVK LFLCSDDDLI TLDGATKALL NVSQDPMNMR  180
TKVRRLYDIA NVFSSMNLIE KTHIPETKKP AYRWLGAKAI AIAEARFLAA PASLCDRIEP  240
RKRAFGTEIT NFTTKRAKTD CSKDRKHYES QNTCSVIKQE QCDSKTAVKR PLPPADTSKK  300
TNAGKSNNQS IDVLENLSSA HTLQYCNHEL TGLLGHYTET WRTWHAEFGR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-32102083228Transcription factor E2F8
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Not detected at the G1/S transition, but increases during the progression into S phase and peaks after the passage into G2. {ECO:0000269|PubMed:11786543}.
UniprotTISSUE SPECIFICITY: Preferentially expressed in proliferating tissues. Highly expressed in young stalk and young flowers. Lower expression in young leaves and mature flowers. Detected in cotyledonary vascular tissues, the shoot apical meristem, the base of trichomes, the fully developed stomata, the central root cylinder and in the columella of lateral roots but not in the primary root tips or in the leaf epidermal cells. {ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:19937368}.
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent regulation of gene expression. Binds specifically the E2 recognition site as a monomer without interacting with DP proteins. May be up-regulating E2FA and down-regulating repressors of cell cycle progression. Promotes cell proliferation and represses cell elongation. Regulated by proteolysis via a ubiquitin-proteasome pathway. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:19937368}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00511DAPTransfer from AT5G14960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143293001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated posttranscroptionally by auxin. {ECO:0000269|PubMed:19937368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892321e-174AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126020.10.0PREDICTED: E2F transcription factor-like E2FD
SwissprotQ9LFQ91e-160E2FD_ARATH; E2F transcription factor-like E2FD
TrEMBLA0A398A7J60.0A0A398A7J6_BRACM; Uncharacterized protein
STRINGBo2g012280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60032547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14960.11e-156DP-E2F-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]