PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143272001
Common NameGSBRNA2T00143272001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 360aa    MW: 40134 Da    PI: 8.2253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143272001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-1763110148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT eEd++l+ ++ ++G g+W++ +++ g++R++k+c++rw +yl
  GSBRNA2T00143272001  63 KGPWTSEEDQKLLAYIDEHGHGSWRSLPEKAGLHRCGKSCRLRWTNYL 110
                          79********************************************97 PP
2Myb_DNA-binding50.74.2e-16116161148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++  +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  GSBRNA2T00143272001 116 RGKFNLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 161
                          899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-2554112IPR009057Homeodomain-like
PROSITE profilePS5129425.3658114IPR017930Myb domain
SuperFamilySSF466897.34E-3059157IPR009057Homeodomain-like
SMARTSM007173.1E-1462112IPR001005SANT/Myb domain
PfamPF002491.6E-1563110IPR001005SANT/Myb domain
CDDcd001675.25E-1065110No hitNo description
Gene3DG3DSA:1.10.10.601.2E-25113166IPR009057Homeodomain-like
PROSITE profilePS5129420.455115165IPR017930Myb domain
SMARTSM007173.9E-16115163IPR001005SANT/Myb domain
PfamPF002492.9E-15116161IPR001005SANT/Myb domain
CDDcd001671.32E-10118161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MRANRIDKSR EKRGFISFSC CLSFSNRSIY HPSSLIYASL VNISTTERKM GRSPCCDKMG  60
LKKGPWTSEE DQKLLAYIDE HGHGSWRSLP EKAGLHRCGK SCRLRWTNYL RPDIKRGKFN  120
LQEEQTIIQL HALLGNRWSA IATHLPKRTD NEIKNYWNTH LKKRLVKMGI DPVTHKPKNE  180
TPLSTLGGLS KNAATLSHMA QWESARLEAE ARLARESKLL HYQTKVSSSH HEHLNIISSD  240
QQKQQQLDSP TSTVSFSEGK TEFVGSSSTC LNMIKETEND WISSTIHEFE GVEEGLTGLL  300
LGGGGSLGPS FSADKNETAG DSSGGGGGEC NNYYEDNKNY LESIFSFVDP SPSDSTPMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26611655108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.148470.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143272001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667340.0KC966734.1 Brassica napus MYB transcription factor 16 (MYB16.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662356.10.0transcription factor MYB34-like isoform X1
SwissprotQ9LXF11e-175MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A3P6AMG10.0A0A3P6AMG1_BRACM; Uncharacterized protein
STRINGBo2g012520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-141myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  5. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]