PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00143241001

Common Name

GSBRNA2T00143241001, LOC106364602, LOC106390409

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 189aa MW: 21921.1 Da PI: 6.3941

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00143241001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.7	6.1e-14	73	129	4	60
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++++rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++L ++l++ ++ + + GSBRNA2T00143241001 73 DRKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENQQLLDKLNQASDSNDLVL 129 689*******************************************99888776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.8E-12	70	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.542	72	120	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.5E-11	73	125	No hit	No description
Pfam	PF00170	6.0E-12	73	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-13	74	123	No hit	No description
CDD	cd14702	1.08E-18	75	122	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MQPNYDSSSL NSMQQQDYFH LNHYYNNLNP STNINNLNLI PYPQIHQEFN LQSPGNNSTT 60 SDEATEDIFV INDRKQRRMV SNRESARRSR MRKQRHLDEL LSQVAWLRSE NQQLLDKLNQ 120 ASDSNDLVLQ ENLRLKEENV ELRQVITSMK KLGGSTSIQG RYCSSSLDHE LDQDFSCITN 180 DPRTHHPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	93	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00143241001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240087	0.0	AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126070.1	1e-136	PREDICTED: basic leucine zipper 43-like
Refseq	XP_013659596.1	1e-136	basic leucine zipper 43-like
Swissprot	Q9FMC2	4e-30	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A3P5ZWT7	1e-135	A0A3P5ZWT7_BRACM; Uncharacterized protein
TrEMBL	M4E437	1e-135	M4E437_BRARP; Uncharacterized protein
STRING	Bra023540.1-P	1e-136	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10632	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	2e-90	basic leucine-zipper 3

Link Out ? help Back to Top
Entrez Gene	106364602 \| 106390409

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]