PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143160001
Common NameGSBRNA2T00143160001, LOC106354417
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 374aa    MW: 41868.6 Da    PI: 7.2398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143160001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-164690147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rWT eE+ ++v+a +++G   W++I +++g ++t+ q++s+ qk+
  GSBRNA2T00143160001 46 RERWTDEEHNKFVEALRLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 90
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-174095IPR009057Homeodomain-like
PROSITE profilePS5129421.0074195IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-94392IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-164493IPR006447Myb domain, plants
SMARTSM007173.6E-134593IPR001005SANT/Myb domain
PfamPF002499.3E-144689IPR001005SANT/Myb domain
CDDcd001677.99E-104891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MASSPLTANV QGDDNRVEET AEIQLNDQVF DYAPKVRKPY TITKERERWT DEEHNKFVEA  60
LRLYGRAWRK IEEHVGTKTA VQIRSHAQKF FSKVAREASG GNVSSLEPIV IPPPRPKRRP  120
MHPYPRKLGN EGDQTSRSVS PSERDNRSPS SVLSTVESEA FGSSDSHSPN RSLSPVSSAS  180
PPAALATTAN APEEFETLKL ELFPAERLLN REEPTKQSLK LFGKTVLVSD PDMSSSPTTS  240
TTYCKSPIQP LPRKLSTSET FPMVINPQEE RLSCWLQVPH KQEECLESEK GVQNEGSSTG  300
SNTGSVDDTG HTEKSSEPET MVCQWKFKPS ERSAFSELRR RNSESNSRGF GSYKKRKMVT  360
QAEEQQQEIH IYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338356RRRNSESNSRGFGSYKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.122426e-92seed
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143160001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531090.0AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649797.10.0protein REVEILLE 1
SwissprotF4KGY60.0RVE1_ARATH; Protein REVEILLE 1
TrEMBLM4E4A70.0M4E4A7_BRARP; Uncharacterized protein
STRINGBra023610.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-142MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  4. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]