PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00143159001 | ||||||||
Common Name | GSBRNA2T00143159001, LOC106357284 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 706aa MW: 79529.2 Da PI: 6.6066 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 28 | 79 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+++Le++F+++++p+ ++r +L ++l+L+ +q+k+WFqN+R++ k GSBRNA2T00143159001 28 HRHSVHQIQRLEAYFKECPHPDDTQRHKLGEELKLKPKQIKFWFQNKRTQAK 79 57899********************************************988 PP | |||||||
2 | START | 130.3 | 2.2e-41 | 224 | 442 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 a +e ++++ eep+W kss ++en++++ ++++ k+ ++e +++++vv+m++ +lv ++d+ +W + + +a+ GSBRNA2T00143159001 224 VNAVTEIIRLIHIEEPMWIKSSiddrlviDQENYEKSFTNISHLKSpsARIESSKDVVVVPMDARNLVDMFFDTE-KWARIFStivnEAK 312 6788999**********************************88888999**************************.**999999999999 PP EEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 81 tlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 t+ v++s ++ qlm+ +l lsplvp R+f ++R+++q +++ wvi+dvS + + e + + ++pSg+li+ ++ng skv GSBRNA2T00143159001 313 TIHVLESMdtqrqNFSQLMYEQLHILSPLVPpREFIILRCCQQIEDDLWVIADVSCHHVNIDFE---SPTCSKRPSGCLIQALPNGLSKV 399 99998887788**********************************************9998764...566888***************** PP EEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 tw+ehv++++++ h ++r l+ g ga++w+ tl+r ce+ GSBRNA2T00143159001 400 TWMEHVEVNEKVRtHRIYRDLLCGGFGYGARRWTVTLERMCER 442 ************99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-16 | 6 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-18 | 10 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.483 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-14 | 23 | 85 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.7E-16 | 28 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.05E-15 | 28 | 82 | No hit | No description |
PROSITE profile | PS50848 | 39.452 | 212 | 445 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.88E-29 | 213 | 443 | No hit | No description |
CDD | cd08875 | 9.95E-93 | 216 | 441 | No hit | No description |
SMART | SM00234 | 5.7E-26 | 221 | 442 | IPR002913 | START domain |
Pfam | PF01852 | 3.4E-34 | 224 | 442 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.9E-9 | 263 | 408 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.35E-10 | 465 | 669 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MDSNHDSSSS NGLETSMSTT NRDNKIYHRH SVHQIQRLEA YFKECPHPDD TQRHKLGEEL 60 KLKPKQIKFW FQNKRTQAKA QSEKVFNASL RAENIRIRRE NEVIQEALKT VTCPPCGGPR 120 PGKEERKLYL QKMRAHNAYL KRQLEQISDF VNNNGGHSIP SVNSLASTSS NPHFSYGTSS 180 NRPLEPPSLE REQYTHEHIN NAQPTQHFQP LSQMEKMMMS QTMVNAVTEI IRLIHIEEPM 240 WIKSSIDDRL VIDQENYEKS FTNISHLKSP SARIESSKDV VVVPMDARNL VDMFFDTEKW 300 ARIFSTIVNE AKTIHVLESM DTQRQNFSQL MYEQLHILSP LVPPREFIIL RCCQQIEDDL 360 WVIADVSCHH VNIDFESPTC SKRPSGCLIQ ALPNGLSKVT WMEHVEVNEK VRTHRIYRDL 420 LCGGFGYGAR RWTVTLERMC ERLHLSSISV FPTTDFAGVV ETIEGRRSVM NLGERMLKNF 480 AWILKMSGNY DFSQLSETNS SGVRVSVRVN SEAGQPTGLI VCAASSICLP LSPLEVYNFL 540 TNLEIRHQWD VLCHGYPAAE VAGFATGTDD KNRVNILQTA STAEDADMMI IQDSFRDALG 600 GMVVYAPVDL NTASAAVSGQ VNPSGIPILP SGFIISRDGH HFTSPELEDG SDYSKSLLTV 660 AFQILVSGPT LSGDLQIEES TTTVNTLITS TLQRIKVMLN CNEGK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00143159001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013652421.1 | 0.0 | homeobox-leucine zipper protein HDG9 isoform X2 | ||||
Swissprot | Q9FFI0 | 0.0 | HDG9_ARATH; Homeobox-leucine zipper protein HDG9 | ||||
TrEMBL | A0A398A6U7 | 0.0 | A0A398A6U7_BRACM; Uncharacterized protein | ||||
STRING | Bra023611.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8468 | 15 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17320.1 | 0.0 | homeodomain GLABROUS 9 |
Link Out ? help Back to Top | |
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Entrez Gene | 106357284 |
Publications ? help Back to Top | |||
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