PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00143096001 | ||||||||
Common Name | GSBRNA2T00143096001, LOC106376574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 143aa MW: 16235.3 Da PI: 8.875 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.3 | 7e-08 | 15 | 50 | 4 | 39 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 k+ +rk +NRe+ArrsR++K++ +e ++ +Le GSBRNA2T00143096001 15 EKKRKRKLSNRESARRSRLKKQKLMEDTIIEISTLE 50 5999*******************9987666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.3E-9 | 10 | 96 | No hit | No description |
SMART | SM00338 | 2.0E-7 | 12 | 76 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.933 | 14 | 77 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.3E-4 | 14 | 54 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.81E-6 | 16 | 70 | No hit | No description |
CDD | cd14702 | 9.86E-11 | 17 | 68 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 19 | 34 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MANAEKTSSG SDIDEKKRKR KLSNRESARR SRLKKQKLME DTIIEISTLE RRIKENIERC 60 KVARRRLDSL ESENVALRSE KTWLLSYVSD LENMIATTSL TLTHSGGDDE NVNVEIAAGD 120 CRRRPMHEYS CGSLQTLASF ET* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 21 | EKKRKRKL |
2 | 15 | 20 | KKRKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in seeds during late stage of development. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both shoots, including young leaves, stipulae and trichomes (except in cotyledons and hypocotyl), and roots, including vascular tissues (e.g. in both the phloem and the xylem). Present in seeds and pollen. Restricted to vasculatures and roots in the presence of sucrose or glucose. {ECO:0000269|PubMed:18841482, ECO:0000269|PubMed:20080816}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response (PubMed:20080816, PubMed:21278122). Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter (PubMed:24243147). {ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122, ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00143096001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Reversibly repressed by glucose and mannose. Slowly induced by Pseudomonas syringae. Induced in roots upon cold and salt stress but then repressed in leaves. Promoted by low energy stress and dark-induced starvation. {ECO:0000269|PubMed:18841482, ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232578 | 0.0 | AC232578.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS013H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013672121.1 | 7e-99 | basic leucine zipper 1 | ||||
Swissprot | Q9FGX2 | 7e-74 | BZIP1_ARATH; Basic leucine zipper 1 | ||||
TrEMBL | A0A3P6ES10 | 2e-97 | A0A3P6ES10_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g092760.1 | 5e-94 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12581 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49450.1 | 3e-76 | basic leucine-zipper 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 106376574 |