PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00142936001 | ||||||||
Common Name | GSBRNA2T00142936001, LOC106409783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 31316.5 Da PI: 7.6779 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.2 | 2.5e-20 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llv++v+ G g+W+++a++ g++R++k+c++rw +yl GSBRNA2T00142936001 28 KGPWTPEEDKLLVEYVTSNGEGRWSSVAKCAGLNRSGKSCRLRWVNYL 75 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.9e-16 | 81 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++ GSBRNA2T00142936001 81 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 125 7888******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.06 | 23 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-32 | 25 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-16 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-18 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.03E-12 | 30 | 75 | No hit | No description |
SMART | SM00717 | 1.8E-13 | 80 | 128 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.952 | 80 | 130 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.8E-14 | 81 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-9 | 85 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MLDWGVDQVH HRNHDLYQQQ QQQQGCRKGP WTPEEDKLLV EYVTSNGEGR WSSVAKCAGL 60 NRSGKSCRLR WVNYLRPGLK RGQITPQEEG IILELHSLWG NKWSTIARYL PGRTDNEIKN 120 YWRTHYKKKE KSFSKQEKVK RSRKQLDLKP QPQQQPHQQN QSSHFVSEDH MNLDNEQNTF 180 SYQTGVFSDQ FHMPQVVAAT SSDHSMMDEG NLWGSLWSLD DHDPHHFGGF SEQRTAANVS 240 EKFNGCGIDA PFCGSWDYSY NGFNTGGYNY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 28 | 129 | 7 | 107 | B-MYB |
1h8a_C | 4e-25 | 28 | 129 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00142936001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371980 | 1e-149 | AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds. | |||
GenBank | AY519593 | 1e-149 | AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596850.1 | 0.0 | PREDICTED: myb-related protein 305 | ||||
Refseq | XP_013705798.1 | 0.0 | myb-related protein 305 | ||||
TrEMBL | A0A0D3DBL1 | 0.0 | A0A0D3DBL1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ERM9 | 0.0 | A0A3P6ERM9_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g088650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-126 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Entrez Gene | 106409783 |
Publications ? help Back to Top | |||
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