PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142818001
Common NameGSBRNA2T00142818001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 655aa    MW: 73366.8 Da    PI: 8.3744
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142818001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17365412148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +++ +v+ +G g+W++I+++ g++R++k+c++rw +yl
  GSBRNA2T00142818001 365 KGLWTAEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYL 412
                          678*******************************************97 PP
2Myb_DNA-binding50.83.8e-16420461346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++++E+el++++++  G++ W++Iar+++ gRt++++k++w++
  GSBRNA2T00142818001 420 SFSPQEEELIIQCHRIIGSR-WSSIARKLP-GRTDNDVKNHWNT 461
                          79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007025.1E-4964261IPR006620Prolyl 4-hydroxylase, alpha subunit
PROSITE profilePS5147113.089140262IPR005123Oxoglutarate/iron-dependent dioxygenase
PfamPF136407.5E-20144261IPR005123Oxoglutarate/iron-dependent dioxygenase
Gene3DG3DSA:1.10.10.607.5E-25356415IPR009057Homeodomain-like
PROSITE profilePS5129427.406360416IPR017930Myb domain
SuperFamilySSF466894.03E-30362459IPR009057Homeodomain-like
SMARTSM007174.9E-16364414IPR001005SANT/Myb domain
PfamPF002498.1E-16365412IPR001005SANT/Myb domain
CDDcd001674.31E-12368412No hitNo description
Gene3DG3DSA:1.10.10.601.1E-22416468IPR009057Homeodomain-like
SMARTSM007175.9E-15417465IPR001005SANT/Myb domain
PROSITE profilePS5129419.292417467IPR017930Myb domain
CDDcd001671.21E-10420463No hitNo description
PfamPF002494.4E-14420461IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MDSRNFLAFS LSLILIFPQI SSASIRFISR WSSSKREGTV IKQKTSASSL VIDPTRVTQL  60
SWTPRVFLYK GLLTDEECDH FINLAKGKLE KSMVADNDSG KSVESEVRTS SGMFLSKRQD  120
DIVANVEAKL AAWTFLPEEN GESMQILHYE NGQKYEPHFD FFHDQVNQQL GGHRIATVLM  180
YLSNVKKGGE TVFPMWKGAT AQPKDDSWTQ CAKQGYAVKP MKGDALLFFN LHPNATTDPS  240
SLHGSCPVVE GEKWSATRWI HVKSFERPVS RTTGCVDENE SCEKWAKAGE CKKNPAYMEP  300
SSMRSSPFIS LSLWTSLRAF ALHHSISIKP FLWHFPTASS PSLLSLNNPQ KMGRPPCCDK  360
SNVKKGLWTA EEDAKILAYV AIHGVGNWSL IPKKAGLNRC GKSCRLRWTN YLRPDLKHDS  420
FSPQEEELII QCHRIIGSRW SSIARKLPGR TDNDVKNHWN TKLKKRLVKM GIDPVTHKPV  480
SQVLTEFRNI SGHGNSSEPF FVRNFKTEPS NNSILTQSNS AWEMMRNATS HESYHNSPMI  540
FTHPTSSEFH FSNHSNFPLN GATSSCSSSS SSASITQPNQ GAQAFCWSDY LLSDPVLPLS  600
SQTQVVGSAA TSNLTLNQNE NFNSHSASSF VDEILDKDQE MLSQFPQLLN DFDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jij_A2e-795626221226PROLYL-4 HYDROXYLASE
2jij_B2e-795626221226PROLYL-4 HYDROXYLASE
2jij_C2e-795626221226PROLYL-4 HYDROXYLASE
2v4a_A2e-795626221226PROLYL-4 HYDROXYLASE
2v4a_B2e-795626221226PROLYL-4 HYDROXYLASE
2v4a_C2e-795626221226PROLYL-4 HYDROXYLASE
2v4a_D2e-795626221226PROLYL-4 HYDROXYLASE
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99231e-180seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142818001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728710.0AC172871.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006L19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3DC330.0A0A0D3DC33_BRAOL; Uncharacterized protein
STRINGBo7g091360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM383522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-148MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]