PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142165001
Common NameGSBRNA2T00142165001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 379aa    MW: 42636.3 Da    PI: 6.9981
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142165001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.9e-30154211260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++++ei+Y+g Hnh+k
  GSBRNA2T00142165001 154 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETAS-DGQITEIIYKGGHNHPK 211
                          8***************************************9.***************85 PP
2WRKY101.16.4e-32313370259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+vkg+++pr+YY+Ct++gC v+k++ersaed+++v +tYeg+Hnh+
  GSBRNA2T00142165001 313 VDGFRWRKYGQKVVKGNTNPRNYYKCTFQGCGVRKQIERSAEDERAVLTTYEGRHNHD 370
                          5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-25141212IPR003657WRKY domain
SuperFamilySSF1182904.32E-23150212IPR003657WRKY domain
SMARTSM007741.3E-30153211IPR003657WRKY domain
PROSITE profilePS5081120.461154212IPR003657WRKY domain
PfamPF031061.6E-22154210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-33297372IPR003657WRKY domain
SuperFamilySSF1182901.19E-27304372IPR003657WRKY domain
PROSITE profilePS5081133.82307372IPR003657WRKY domain
SMARTSM007747.9E-36312371IPR003657WRKY domain
PfamPF031062.1E-24314370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSSASFTDLL ASSGVDCYEE DEDFLCGFSP ERTGSGLPKF KTAQPPPLPI SQSFAFSDLL  60
DSPLLLSSSH SLISPTTGAF PYQGFNRTNN HSDVPWQLQP QTQPLNASSA LQETYAVQDL  120
HKKKDPVPRE FAAHSLGSDR QVKVPSYMVS RNSNDGYGWR KYGQKQVKKS ENPRSYFKCT  180
YPNCVSKKIV ETASDGQITE IIYKGGHNHP KPEFTKRPSG STSANARRMF NPSSVVNETH  240
DQSENSSISF DYSDLEQKSF KSEYGEIDEE EEQPEMKRPK REVEDEGMSI EVSRGVKEPK  300
VVVQTISDID ILVDGFRWRK YGQKVVKGNT NPRNYYKCTF QGCGVRKQIE RSAEDERAVL  360
TTYEGRHNHD IPTTLRRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-32154372877Probable WRKY transcription factor 4
2lex_A5e-32154372877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.285021e-130seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and seeds. {ECO:0000269|PubMed:18839316}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142165001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931660.0KM593166.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132720.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLA0A3P6A5920.0A0A3P6A592_BRACM; Uncharacterized protein
STRINGBra022786.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.10.0WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]