PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140926001
Common NameGSBRNA2T00140926001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 335aa    MW: 37674.8 Da    PI: 4.6134
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140926001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.3e-49191442128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF++r kky++g++++r+tk gyWkatgk++
  GSBRNA2T00140926001  19 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCPRGKKYPHGSQNRRTTKMGYWKATGKER 107
                          69************************999.99***************778888999********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+s ++e++g+k+tLvf+ grapkge+t+W+mhey++
  GSBRNA2T00140926001 108 DVKS-SSEVIGTKRTLVFHIGRAPKGERTEWIMHEYSM 144
                          ****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-5512160IPR003441NAC domain
PROSITE profilePS5100552.45518161IPR003441NAC domain
PfamPF023651.7E-2520143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEVDPVGVSM DTVEALTVFP GFKFSPTDVE LISYYLKRKM DGLERSVEVI PETDIYNFEP  60
WDLPDKSIVK SDTEWFFFCP RGKKYPHGSQ NRRTTKMGYW KATGKERDVK SSSEVIGTKR  120
TLVFHIGRAP KGERTEWIMH EYSMKGSPLD DALVVCRLRR NIEFHKAPEP NLAADKHMIL  180
PNGPASSGSP SDWDSMIDFY LAGESGENLL TEMAETSRNV QVHTDEDFFA DILSDDIISL  240
DEAVMTGNTT NEVPTLESAS METRLLPLPN MIDKHMASLL EEIPPQEKEG KESSSTEPLS  300
SCFVGLYSIK TVNRVRWDVI IGAVALIAML FYLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-441116113168NAC domain-containing protein 19
3swm_B8e-441116113168NAC domain-containing protein 19
3swm_C8e-441116113168NAC domain-containing protein 19
3swm_D8e-441116113168NAC domain-containing protein 19
3swp_A8e-441116113168NAC domain-containing protein 19
3swp_B8e-441116113168NAC domain-containing protein 19
3swp_C8e-441116113168NAC domain-containing protein 19
3swp_D8e-441116113168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140926001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626921.10.0PREDICTED: NAC domain-containing protein 89-like
RefseqXP_022554495.10.0NAC domain-containing protein 89-like
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A0D3B2A20.0A0A0D3B2A2_BRAOL; Uncharacterized protein
STRINGBo3g016820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]