PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140622001
Common NameGSBRNA2T00140622001, LOC106386300
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 362aa    MW: 40176.8 Da    PI: 8.5859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140622001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-164892147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rWT eE+ ++v+a k++G   W++I  ++g ++t+ q++s+ qk+
  GSBRNA2T00140622001 48 RERWTDEEHYKFVEALKLHGRA-WRRIQGHVG-TKTAVQIRSHAQKF 92
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-154397IPR009057Homeodomain-like
PROSITE profilePS5129418.0614397IPR017930Myb domain
TIGRFAMsTIGR015574.6E-144695IPR006447Myb domain, plants
SMARTSM007175.8E-124795IPR001005SANT/Myb domain
PfamPF002496.2E-134891IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-84888IPR009057Homeodomain-like
CDDcd001674.60E-95093No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MKSPSLTVNA QGTKASPSSR VEETSDTQIQ FNDYAPKVRK PYIITKERER WTDEEHYKFV  60
EALKLHGRAW RRIQGHVGTK TAVQIRSHAQ KFFSKVAREA TGGSNGSSVE PIVIPPPRPK  120
RRPMHPYPRK LGNEGDQASR SVSPSERDNQ SPTSVLSPVG SEALDSSDSH SPDRSLPPVS  180
SASPQAALAS TSNAPEELET LKLELFPRER SIKEPTKKSL KLFGKIVLVS DSDMSSSLTT  240
STAYCKSPIQ PLPQEELLSC WIQVPPRKEE VENRCLDSEK AFQNEGSSTG SNTGSVDDTG  300
HTDKSSEPET MVCQWEFKPS ERSAFSELRR ETSESNSRGF SPYKKRKTVI EAAQEEIRLY  360
L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.122420.0seed
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140622001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531090.0AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621794.10.0PREDICTED: protein REVEILLE 1-like
RefseqXP_013681616.10.0protein REVEILLE 1
SwissprotF4KGY60.0RVE1_ARATH; Protein REVEILLE 1
TrEMBLA0A0D3B1L50.0A0A0D3B1L5_BRAOL; Uncharacterized protein
STRINGBo3g012470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-157MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  4. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]