PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140620001
Common NameGSBRNA2T00140620001, LOC106385176
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 495aa    MW: 56497.9 Da    PI: 5.4587
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140620001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.6e-5561331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k  + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgk
  GSBRNA2T00140620001   6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGK 94 
                          79****************************.99***************6345667999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v   k++++g+kktLv+y+grap+g +t Wvmheyrl
  GSBRNA2T00140620001  95 DRRVSL-KDQAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
                          ******.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-634157IPR003441NAC domain
PROSITE profilePS5100561.2596157IPR003441NAC domain
PfamPF023651.7E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090602Biological Processsieve element enucleation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL KDQAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIIV EAKPRLDQHQ HHHHQHYVNT  180
SSNVSGNSSF DVCSDLEISS STHQVLPNYN NATETQPKFG NTNAIGDHDD WSQYMAQGMP  240
TGFSNYGSPY GSYLTQPNVN TEIECGMLQH QMSLPPLRVE GSPIQTSDFS NGTNQNSGQY  300
GFNDFTFAAS NSNQLYNNNV DDHLIHIGNL EEQLLNAGNS TWMKTSSGSL KQQSFINQDE  360
ILPSFEDNDQ DLECFGGPRT NTINNIEIDD FFSFENQVEG DADDKTTIEE DIRVDHKMLI  420
CTRQTSEVLY YQVVPSQVLK IHINPVQGIE ERTMFTEEED KDSWFKKAEN VAKMKLKQIS  480
LVAKRYYKGL TIIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-55115712165NO APICAL MERISTEM PROTEIN
1ut4_B3e-55115712165NO APICAL MERISTEM PROTEIN
1ut7_A3e-55115712165NO APICAL MERISTEM PROTEIN
1ut7_B3e-55115712165NO APICAL MERISTEM PROTEIN
3swm_A3e-55115715168NAC domain-containing protein 19
3swm_B3e-55115715168NAC domain-containing protein 19
3swm_C3e-55115715168NAC domain-containing protein 19
3swm_D3e-55115715168NAC domain-containing protein 19
3swp_A3e-55115715168NAC domain-containing protein 19
3swp_B3e-55115715168NAC domain-containing protein 19
3swp_C3e-55115715168NAC domain-containing protein 19
3swp_D3e-55115715168NAC domain-containing protein 19
4dul_A3e-55115712165NAC domain-containing protein 19
4dul_B3e-55115712165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140620001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052381e-107AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11.
GenBankCP0026881e-107CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626927.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
RefseqXP_013680578.10.0NAC domain-containing protein 86 isoform X1
SwissprotQ9FFI50.0NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A3P6AGU70.0A0A3P6AGU7_BRAOL; Uncharacterized protein
STRINGBo3g012450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.10.0NAC domain containing protein 86
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]