PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140511001
Common NameGSBRNA2T00140511001, LOC106443155
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 191aa    MW: 22058.1 Da    PI: 5.8758
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140511001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.41.5e-1375124554
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                          +++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++  ++l++ ++
  GSBRNA2T00140511001  75 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQILEKLNQASD 124
                          79**************************************9999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-1271135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-1073126No hitNo description
PROSITE profilePS5021710.28973121IPR004827Basic-leucine zipper domain
PfamPF001701.7E-1175132IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.06E-1275124No hitNo description
CDDcd147021.17E-1776123No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MHPNYDSSSI NNMQQQDYFH LNPYYNNLNP STNNNLNLLS YPQIQELNNL QSPASNNNST  60
TSDEATEETF VISERKQRRM VSNRESARRS RMRKQRHLDE LLSQVAWLRS ENHQILEKLN  120
QASDSNDLVL QENLSLKEEN LELQQVITSM KKLEGGSTSF RGRYCSSSLD HDLDQDFSCI  180
TNDPRTHHPS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18794RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140511001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325540.0AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625169.11e-137PREDICTED: basic leucine zipper 43-like
RefseqXP_013740201.11e-137basic leucine zipper 43
RefseqXP_022553803.11e-137basic leucine zipper 43-like
TrEMBLA0A0D3B1E21e-136A0A0D3B1E2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AAH01e-136A0A3P6AAH0_BRAOL; Uncharacterized protein
STRINGBo3g010750.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.13e-74basic leucine-zipper 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]