PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00140491001

Common Name

GSBRNA2T00140491001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 193aa MW: 22191.4 Da PI: 6.4181

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00140491001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.8	4.7e-13	74	126	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +++rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++ +l++ ++ + GSBRNA2T00140491001 74 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQILGKLNKATDSND 126 79*************************************99988888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-12	70	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.002	72	120	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.0E-10	72	123	No hit	No description
SuperFamily	SSF57959	3.59E-12	74	123	No hit	No description
Pfam	PF00170	3.0E-11	74	131	IPR004827	Basic-leucine zipper domain
CDD	cd14702	4.90E-18	75	122	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MHPNYDSSSI NNMQQQDYFH LNPYYNNLNP STNNNLNLIS YPQMQELNNL QSPASHNSTT 60 SDEATEETFV ISERKQRRMV SNRESARRSR MRKQRHLDEL LSQVAWLRSE NHQILGKLNK 120 ATDSNDLVLQ ENLILKEENL ELRQVITSMK KLGGAEGGST SFHERYCSSS LDHDLDQDFS 180 CITNDPKTHH PS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	93	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00140491001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232554	0.0	AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013627967.1	1e-132	PREDICTED: basic leucine zipper 43-like
Refseq	XP_013740180.1	1e-132	basic leucine zipper 43-like
Swissprot	Q9FMC2	9e-31	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A0D3B1C9	1e-131	A0A0D3B1C9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AG93	1e-131	A0A3P6AG93_BRAOL; Uncharacterized protein
STRING	Bo3g010620.1	1e-132	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10632	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	2e-80	basic leucine-zipper 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]