PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00139488001 | ||||||||
Common Name | GSBRNA2T00139488001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 133aa MW: 14571.5 Da PI: 10.3296 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47 | 6.8e-15 | 3 | 82 | 4 | 83 |
trihelix 4 kqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 ++ v L+ea++ ++ +r+klk+++We+v+k++ ++++ ++++qCk+k+e+++kry+ + +++++ ss ++ f+ GSBRNA2T00139488001 3 RRAVSSLLEAYETKWVLRNRAKLKGQDWEDVAKHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATANGS----SSPWKCFH 82 57899******************************87766777788999*****************999974....55677776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.8E-17 | 4 | 82 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MERRAVSSLL EAYETKWVLR NRAKLKGQDW EDVAKHVSSR ASHTKSPKTQ TQCKNKIESM 60 KKRYRSESAT ANGSSSPWKC FHLCPPSASA CFASELLCSF ALTRTSVAGG DSSAAATSCC 120 SDVSRIQRRR HG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00139488001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL132971 | 4e-62 | AL132971.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T12E18. | |||
GenBank | AL138656 | 4e-62 | AL138656.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T14E10. | |||
GenBank | AY084391 | 4e-62 | AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence. | |||
GenBank | AY140041 | 4e-62 | AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds. | |||
GenBank | BT006322 | 4e-62 | BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds. | |||
GenBank | CP002686 | 4e-62 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600436.1 | 6e-42 | PREDICTED: trihelix transcription factor ASIL1 isoform X2 | ||||
TrEMBL | A0A0D3DQF0 | 8e-91 | A0A0D3DQF0_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g068640.1 | 1e-91 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9859 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-43 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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