PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00138844001

Common Name

GSBRNA2T00138844001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 232aa MW: 25396.6 Da PI: 4.6482

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00138844001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.4e-42	54	153	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+d+++s+vyeA ar+rdPvyG++g i +lq+q+++l GSBRNA2T00138844001 54 PCAACKILRRRCADKCVLAPYFPPTDPAKFIIAHRVFGASNIIKFLQELPESQRTDTVNSMVYEAGARMRDPVYGCAGAIYHLQKQVCEL 143 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +a+la+++ e GSBRNA2T00138844001 144 QAQLAKTQVE 153 ***99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.03	53	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-42	54	151	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MLKMETFGGI SVAAPTSSAV AKTTTPANSA SPTSSPPPPL SPEQPQQQTV VLSPCAACKI 60 LRRRCADKCV LAPYFPPTDP AKFIIAHRVF GASNIIKFLQ ELPESQRTDT VNSMVYEAGA 120 RMRDPVYGCA GAIYHLQKQV CELQAQLAKT QVELVSMQLQ RSDLLELLHK TEQANLSEQQ 180 EGQQNMSFES SFESGDEFIS SHDEVTNDLG FLDDNNNNNN SSMLWSDPLW T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	53	155	10	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	53	155	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00138844001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240985	0.0	AC240985.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008O16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133875.1	1e-173	PREDICTED: LOB domain-containing protein 11-like
Swissprot	Q9SK08	1e-121	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A291LQZ3	1e-172	A0A291LQZ3_BRARR; Transcription factor LBD11a
TrEMBL	A0A397ZY00	1e-172	A0A397ZY00_BRACM; Uncharacterized protein
TrEMBL	M4C8G3	1e-172	M4C8G3_BRARP; Uncharacterized protein
STRING	Bra000491.1-P	1e-173	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-104	LOB domain-containing protein 11

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]