PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00138277001

Common Name

GSBRNA2T00138277001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 522aa MW: 56908.1 Da PI: 5.936

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00138277001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.5e-31	298	356	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ GSBRNA2T00138277001 298 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRSILITTYEGNHNHP 356 7**************************9**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-33	282	358	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-28	290	358	IPR003657	WRKY domain
PROSITE profile	PS50811	29.597	292	358	IPR003657	WRKY domain
SMART	SM00774	1.8E-36	297	357	IPR003657	WRKY domain
Pfam	PF03106	9.1E-27	299	356	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MFRFPVSLGG SRDETRHDQI TPLDERRVVV GEVDFFSDKR DRVSRENIND DEDDEASKVH 60 VKMESSRVED NDRSRDVNIG LNLLTANTGS DESTVDDGLS MDMEDKRAKF ENAQLQEELK 120 KMKIENQRLR EMLSQATNNF NSLQMQLVAV MRQQEQRNSS QDHLLATEGN AEGSKRQEVQ 180 TMVPRQFMDL GPSSGAAEQD AEVSSEERTM LRSGSPPLLL ENSNPRETGK RLLGREESPE 240 SESNAWGNPN KVSKHNPPSG SNNNNNGNRN LIDQSAAEAT MRKARVSVRA RSEATMITDG 300 CQWRKYGQKM AKGNPCPRAY YRCTMAGGCP VRKQVQRCAE DRSILITTYE GNHNHPLPPA 360 AMAMASTTTA AASMLLSGSV SSQDNLMNPT NLLARAILPC SSSMATISAS APFPTITLDL 420 TNSPNGNNPN MTTNNPLMQF AQRPGFNPAV LPQVVGQGLY YNQQQSKFSG LHVSAASAAI 480 ASDPNFAAAL AAAITSIING SSHQNNNGNN TNLATSNGDN I*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MFRFPVSLGG SRDETRHDQI TPLDERRVVV GEVDFFSDKR DRVSRENIND DEDDEASKVH  60
VKMESSRVED NDRSRDVNIG LNLLTANTGS DESTVDDGLS MDMEDKRAKF ENAQLQEELK  120
KMKIENQRLR EMLSQATNNF NSLQMQLVAV MRQQEQRNSS QDHLLATEGN AEGSKRQEVQ  180
TMVPRQFMDL GPSSGAAEQD AEVSSEERTM LRSGSPPLLL ENSNPRETGK RLLGREESPE  240
SESNAWGNPN KVSKHNPPSG SNNNNNGNRN LIDQSAAEAT MRKARVSVRA RSEATMITDG  300
CQWRKYGQKM AKGNPCPRAY YRCTMAGGCP VRKQVQRCAE DRSILITTYE GNHNHPLPPA  360
AMAMASTTTA AASMLLSGSV SSQDNLMNPT NLLARAILPC SSSMATISAS APFPTITLDL  420
TNSPNGNNPN MTTNNPLMQF AQRPGFNPAV LPQVVGQGLY YNQQQSKFSG LHVSAASAAI  480
ASDPNFAAAL AAAITSIING SSHQNNNGNN TNLATSNGDN I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-23	284	360	1	76	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.25602	0.0	flower

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00447	DAP	Transfer from AT4G22070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00138277001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC246577	0.0	KC246577.1 Brassica napus WRKY transcription factor 31.1 (WRKY31.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013734026.1	0.0	probable WRKY transcription factor 31
Swissprot	Q93WT0	0.0	WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBL	A0A3P6FUH1	0.0	A0A3P6FUH1_BRAOL; Uncharacterized protein
STRING	Bo1g025900.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1057	28	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22070.1	0.0	WRKY DNA-binding protein 31

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]