PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137276001
Common NameGSBRNA2T00137276001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 353aa    MW: 37086.1 Da    PI: 9.0011
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137276001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1272e-3953143286
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas.....ns 85 
                          +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  +++ +  ++     +s
  GSBRNA2T00137276001  53 PAAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNATLRGGGGstifaQS 142
                          5789*****************************************************************888422222222222222111 PP

                  TCP  86 s 86 
                          s
  GSBRNA2T00137276001 143 S 143
                          1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3459149IPR005333Transcription factor, TCP
PROSITE profilePS5136927.89259113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDQNSHDRPT AEAGLQLNST ENPSPGRSVP FAGGATSSST STSSGTALAV VKPAAKKPSK  60
DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IASTGTGTIP  120
ANFSTLNATL RGGGGSTIFA QSSKSSPFHS TGMSLYEDTA QNAAVFGFHH QGYPPIMSAE  180
RNQPTLGKPY REDYFKESEP SGSSQKPGQF QEQEMGPGPG MGRGTANVVP QPMWAVAPGT  240
TNGGSAFWML PMSGSGGREQ MQQQPGHQMW AFNQGSYPVG TGRVVTAPMG SMMLGGQQLG  300
LGVAEGNMAA AMRGSRGGGG DGLAMTLDQH QHQHHQQHQE PNQSQASGDD KK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.106150.0flower| microspore-derived embryo| vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137276001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691336.10.0transcription factor TCP22-like
SwissprotQ9C7G41e-169TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A398AAY80.0A0A398AAY8_BRACM; Uncharacterized protein
STRINGBo2g075210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-134TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]