PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136773001
Common NameGSBRNA2T00136773001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 302aa    MW: 33178.8 Da    PI: 9.9259
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136773001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-13556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE+e l+ +v+++G+g Wk I r         +R+  ++k++w+++
  GSBRNA2T00136773001  5 KLKWTEEEEEALLAGVQKHGPGKWKNIIRDPEfadplYNRSNIDLKDKWRNL 56
                         689***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.907161IPR017930Myb domain
SuperFamilySSF466893.23E-16259IPR009057Homeodomain-like
SMARTSM007171.3E-9459IPR001005SANT/Myb domain
PfamPF002493.9E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-14556IPR009057Homeodomain-like
CDDcd116601.31E-12756No hitNo description
SMARTSM005262.2E-17125191IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.5E-10126201IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.43E-14126206IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.837127203IPR005818Linker histone H1/H5, domain H15
PfamPF005382.1E-10129201IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGNHKLKWTE EEEEALLAGV QKHGPGKWKN IIRDPEFADP LYNRSNIDLK DKWRNLSVPA  60
DIQGSIDKVR TPKIKAAALN LAAVAAAATS TPPPSSATPS PVAPLPRSGS SDLNVDDSWN  120
TMVDAKNAPR YDGMIFEALS ALTDPNGSDV TTIFNFIEEK THEVPPTFKR VLGSRLRRLA  180
AQGKIEKVNQ IRAGTQNFYR MNGTSFSGMR APVVARPKEV NVKPRQTNSQ RVLTVSQRKV  240
DQASGTAAFK LAEVEKNLEL VKRAAEHKER MIKLAEQAEI ILLLAEELHE ACSQGKIVEL  300
N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.235410.0leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136773001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728591e-146AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602750.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L11e-119TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A3P6FKV70.0A0A3P6FKV7_BRAOL; Uncharacterized protein
STRINGBo8g104830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-102MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]