PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00135460001

Common Name

GSBRNA2T00135460001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 427aa MW: 47196.4 Da PI: 4.4136

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00135460001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.3	3.6e-24	331	381	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d+s++F+lpi++AA+ + +c+Tv+K+iCR+ G+ RWPhRkiksl GSBRNA2T00135460001 331 TGKLKLKDISMHFHLPIQEAARRMSLCPTVVKKICRRGGLYRWPHRKIKSL 381 56899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	312	401	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-20	334	381	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MAGDDDPKPP GLEDKDDGDP YYEPFSEEEL QNLMSNQNPN LMDFAFTENP LPPPTPTPIT 60 IATSDIIETE MLNQLSLTIP NCDDTDDFLV TSFDDDVDLS WDLSDIPSEF LNDNMDSNIL 120 GEIGTNDDNG NLVGGTGTLE VSTRVFVENG PNVEAGGGSS APITPTVSNG ILVCTCCNLL 180 RTLIHSNGQE MMRLDFHGGI GYFCHAILEI HRLDGSTEPQ YQTIDLKFLS MEDVKRFIED 240 YLAARAACGF GVVEDTNADF YQAMNPNFSN NQPPMLALPP VDDVPMPQAI VPDPALNVPS 300 VPLYVGLRDE PPVSKGKKRK QTPLAIQRER TGKLKLKDIS MHFHLPIQEA ARRMSLCPTV 360 VKKICRRGGL YRWPHRKIKS LLRKISSLKS SLETTKDAQA KARVEAEIER LEKQINEICS 420 EALKYA*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MAGDDDPKPP GLEDKDDGDP YYEPFSEEEL QNLMSNQNPN LMDFAFTENP LPPPTPTPIT  60
IATSDIIETE MLNQLSLTIP NCDDTDDFLV TSFDDDVDLS WDLSDIPSEF LNDNMDSNIL  120
GEIGTNDDNG NLVGGTGTLE VSTRVFVENG PNVEAGGGSS APITPTVSNG ILVCTCCNLL  180
RTLIHSNGQE MMRLDFHGGI GYFCHAILEI HRLDGSTEPQ YQTIDLKFLS MEDVKRFIED  240
YLAARAACGF GVVEDTNADF YQAMNPNFSN NQPPMLALPP VDDVPMPQAI VPDPALNVPS  300
VPLYVGLRDE PPVSKGKKRK QTPLAIQRER TGKLKLKDIS MHFHLPIQEA ARRMSLCPTV  360
VKKICRRGGL YRWPHRKIKS LLRKISSLKS SLETTKDAQA KARVEAEIER LEKQINEICS  420
EALKYA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00135460001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022548753.1	0.0	uncharacterized protein LOC111201326
TrEMBL	A0A3P6CLG3	0.0	A0A3P6CLG3_BRACM; Uncharacterized protein
STRING	Bra008646.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	5e-08	RWP-RK domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]