PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135353001
Common NameGSBRNA2T00135353001, LOC106366711, LOC106371957
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 375aa    MW: 41355.3 Da    PI: 8.9249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135353001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-174185147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rWT eE+ ++v+a k++G   W++I +++g ++t+ q++s+ qk+
  GSBRNA2T00135353001 41 RERWTDEEHNKFVEALKLHGRA-WRKIEEHVG-TKTAVQIRSHAQKF 85
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.8E-173591IPR009057Homeodomain-like
PROSITE profilePS5129421.0813690IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-93890IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-153988IPR006447Myb domain, plants
SMARTSM007172.5E-134088IPR001005SANT/Myb domain
PfamPF002494.6E-144184IPR001005SANT/Myb domain
CDDcd001671.82E-104386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MASSPLTTNV QGAKTKIQLS DQEGNDYAPK VRKPYTITKE RERWTDEEHN KFVEALKLHG  60
RAWRKIEEHV GTKTAVQIRS HAQKFFSKVA KEASGGNGSS LEPILIPPPR PKRKPMHPYP  120
RKLGNEGDQA SRSVSPSERD NGSPTSVLST VGSEALGSSD SHSPNRSLSP VSSASPPAAP  180
LATTENAPEE LETSATKLEL FPRESLVKEP KKQSLRLFGN TVLVSDSGVS SSLTTYCKSP  240
IIQPLPRKLS RSETFPMVIN PQEKLLSCWI QQVPPKQEEV ENRCSDSEKA VQNEGSSTGS  300
NTGSVDDTGH TDKSSEPPET MVCRWEFKAS ERSAFSELRR KNSESNSRGF GPYKKRKMVI  360
EAEQEEQEQI RLCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338356RRKNSESNSRGFGPYKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.122422e-97seed
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135353001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531090.0AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661826.10.0protein REVEILLE 1-like
RefseqXP_013667531.10.0protein REVEILLE 1-like
SwissprotF4KGY60.0RVE1_ARATH; Protein REVEILLE 1
TrEMBLA0A3P6CKC00.0A0A3P6CKC0_BRACM; Uncharacterized protein
STRINGBra008563.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-142MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  4. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]