PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00134916001 | ||||||||
Common Name | GSBRNA2T00134916001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 336aa MW: 37324.3 Da PI: 5.6531 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.9 | 2e-39 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C+aCk+lrrkC+++Cv+ap+fp +qp+kf +vhk FGasnv kll++lp ++reda++slvyeAe r++dPvyG+vg+i+ qq+l+q GSBRNA2T00134916001 7 PCSACKFLRRKCTRECVFAPHFPPDQPNKFSCVHKAFGASNVAKLLSELPLNQREDAVTSLVYEAETRIQDPVYGCVGLISLQQQRLKQI 96 7***************************************************************************************** PP DUF260 91 kaelallkee 100 + +++++++e GSBRNA2T00134916001 97 QRDTDVARRE 106 **99988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.906 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-39 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MASSNSPCSA CKFLRRKCTR ECVFAPHFPP DQPNKFSCVH KAFGASNVAK LLSELPLNQR 60 EDAVTSLVYE AETRIQDPVY GCVGLISLQQ QRLKQIQRDT DVARRELATY IGPEAMFPIL 120 QPQQPHFMPQ SQTQQPQFVP ETQQTVFMPQ TQETHFTPQT HQSQFIPQTQ KFMPETQQPS 180 SSSSVSAELT QQQHHDPSMM VIPTAQLYHQ QQQQQFFEFQ QPEAVAGEQH SEMLRAYGEG 240 GSSSSHQHHL NQPQAHVLRF NDGFDSVPTG SVTSTGFNQL TPSGTTVTGV SHSLALGGGT 300 YDIEAQLFMP TQSSQQLPLQ TQETQTSSES DEEGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-45 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-45 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00134916001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022568573.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 1e-97 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A3P6DC04 | 0.0 | A0A3P6DC04_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g021590.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8008 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-92 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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