PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00134697001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 189aa MW: 21580.8 Da PI: 4.5356

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00134697001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.9	1.2e-33	3	118	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeelvv++L+++++ +++ +vi+++d+y ++PwdLp k+ +e ++wyf+s++ ++r+t++gyW++ g d+ GSBRNA2T00134697001 3 LPPGFRFFPTDEELVVHFLHRRASLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRKT--------QERVTSNGYWESMGIDE 83 79***********************999.99***********87778899*9975........5799********* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+++ +++ vg+kk L+fy g++++ +Wvm+ey+l GSBRNA2T00134697001 84 PVFTSsTHKRVGIKKYLTFYLGDSQS----NWVMQEYSL 118 9867778*******887755....9****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-43	1	156	IPR003441	NAC domain
PROSITE profile	PS51005	41.67	3	156	IPR003441	NAC domain
Pfam	PF02365	8.2E-22	4	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MNLPPGFRFF PTDEELVVHF LHRRASLLPC HPDVIPDLDL YPYDPWDLPG KALGEGRQWY 60 FYSRKTQERV TSNGYWESMG IDEPVFTSST HKRVGIKKYL TFYLGDSQSN WVMQEYSLPD 120 SSSSSGRSSK RSSRGSTSSS HKPDYSKWVI CRVYEQNSSE EEDDDGAELS CLDEVFLSLD 180 DLDEVSLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-36	1	162	18	174	NAC domain-containing protein 19
3swm_B	1e-36	1	162	18	174	NAC domain-containing protein 19
3swm_C	1e-36	1	162	18	174	NAC domain-containing protein 19
3swm_D	1e-36	1	162	18	174	NAC domain-containing protein 19
3swp_A	1e-36	1	162	18	174	NAC domain-containing protein 19
3swp_B	1e-36	1	162	18	174	NAC domain-containing protein 19
3swp_C	1e-36	1	162	18	174	NAC domain-containing protein 19
3swp_D	1e-36	1	162	18	174	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13732	1e-154	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00134697001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966746	0.0	KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013609384.1	1e-137	PREDICTED: NAC transcription factor 25-like
Refseq	XP_013652771.1	1e-137	NAC domain-containing protein 104-like
Refseq	XP_013699426.1	1e-137	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	1e-115	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0D3E263	1e-136	A0A0D3E263_BRAOL; Uncharacterized protein
STRING	Bo9g018140.1	1e-136	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-98	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]