PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133403001
Common NameGSBRNA2T00133403001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 543aa    MW: 59822.1 Da    PI: 5.2917
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133403001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.2e-08244264526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C++Gd+C +aHg
  GSBRNA2T00133403001 244 PCPEFRK-GSCSRGDSCEYAHG 264
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.18E-159137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-1610166IPR020683Ankyrin repeat-containing domain
CDDcd002044.14E-1611156No hitNo description
PfamPF127962.9E-1050126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00445787IPR002110Ankyrin repeat
PROSITE profilePS5029714.95557133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001992124IPR002110Ankyrin repeat
PROSITE profilePS500889.77892127IPR002110Ankyrin repeat
SMARTSM003562.5E-5239265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5243266IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6244264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619244266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4272302IPR000571Zinc finger, CCCH-type
SMARTSM0035620274297IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.136274298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGDDELSHLK FTLLLESAAC NDLSGFKSLI EEEGLSTIDR SGLWYGRRIG SKKMGFEERT  60
PLMIAALFGS KEIVDYIIST GLVDVNRSCG SDGATALHCA VSGLSGNSLE VVTLLLNASA  120
DPESRDADGN KPVDVMVFPC LSPVFSGRKK VLERLLKGNE ADVQEEEAEA EVSLSPPRKE  180
YPIDPTLPDI KNGIYGTDEF RMYAFKIKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY  240
SCVPCPEFRK GSCSRGDSCE YAHGIFECWL HPAQYRTRLC KDETNCSRRV CFFAHKPDEL  300
RPLYTSTGSV VTTPPLSPNG VPSPIGSGKP WMNWPSATPP TLHLPGSRLK SALNAREINF  360
SEEIHQSLAS PGRWNNNTAA SPPFSGNGMN RLSSGGISPV HSLSDMFGAS SLSSSPVGAN  420
YQFSMDSLAS RAAAFANQRS QSFIERSNEL NQHRPAMTTA CLDDWGSLDG KLDWSVNGDE  480
LQELRNSTSF RLRAGSMESR TPTELEEPDV SWVEPLVKEP QEPRVAPVWM EQSYMETEQT  540
VA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133403001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612376.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
RefseqXP_013612377.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3N6RC380.0A0A3N6RC38_BRACR; Uncharacterized protein
STRINGBo9g135400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]