PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133193001
Common NameGSBRNA2T00133193001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 238aa    MW: 27565.9 Da    PI: 8.4713
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133193001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171057148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed llv+ v+ +G ++W+ +a+  g++Rt+k+c++rw +yl
  GSBRNA2T00133193001 10 KGPWTEQEDILLVNFVHAFGDRRWDFVAKVSGLNRTGKSCRLRWVNYL 57
                         79********************************************97 PP
2Myb_DNA-binding50.93.6e-1663108148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E+ l +++++ +G++ W++Ia++++ gRt++++k++w++++
  GSBRNA2T00133193001  63 RGKMTHQEERLVLELHATWGNR-WSKIAKKLP-GRTDNEIKNYWRTHM 108
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201157IPR017930Myb domain
SuperFamilySSF466893.41E-298104IPR009057Homeodomain-like
SMARTSM007173.3E-15959IPR001005SANT/Myb domain
PfamPF002494.5E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-201164IPR009057Homeodomain-like
CDDcd001671.53E-101257No hitNo description
PROSITE profilePS5129426.27658112IPR017930Myb domain
SMARTSM007174.3E-1662110IPR001005SANT/Myb domain
PfamPF002493.5E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2365111IPR009057Homeodomain-like
CDDcd001673.84E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKNVQEEYRK GPWTEQEDIL LVNFVHAFGD RRWDFVAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTHQE ERLVLELHAT WGNRWSKIAK KLPGRTDNEI KNYWRTHMRK QAQEKKRPMS  120
PTSSSSNCCS SSMTQDTVGS NGKMNQECDD GNYSMDDIWR EIDQSGANII KPVKDIYYSE  180
QSCHFNFHPL PLASPTWESS LESTWNMDAY ESKMSSFAID QFPLSFEHGR SSWSSLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2871121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.211960.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133193001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667400.0KC966740.1 Brassica napus MYB transcription factor 59 (MYB59.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609101.11e-180PREDICTED: transcription factor MYB59-like isoform X1
SwissprotQ4JL841e-144MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A0D3ECW01e-179A0A0D3ECW0_BRAOL; Uncharacterized protein
TrEMBLA0A3N6TTM71e-179A0A3N6TTM7_BRACR; Uncharacterized protein
STRINGBo9g140750.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-140myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]