PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00132880001 | ||||||||
Common Name | GSBRNA2T00132880001, LOC106454431 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 270aa MW: 29992.9 Da PI: 7.8744 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 80 | 129 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps+ r+r++lg+f+taeeAa +++a+ +++g GSBRNA2T00132880001 80 KYRGVRRRP-WGKYAAEIRDPSK---RARVWLGTFDTAEEAAIGYDKAAIRIKG 129 8********.**********975...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.0E-28 | 80 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.71E-30 | 80 | 135 | No hit | No description |
SMART | SM00380 | 1.9E-33 | 80 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 80 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 80 | 136 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.168 | 80 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MKSRERNVKY TVHRKLTSLS PKVVKITVTD PCATDSSSDE ENDDRFVSPA KRVKRYVEVI 60 RFCDAAKRKK PTNKAAEPVK YRGVRRRPWG KYAAEIRDPS KRARVWLGTF DTAEEAAIGY 120 DKAAIRIKGR HALTNILTPP SSPPAIDLET VSRCDDSAVE ESQSSSIMRS PTSVLRFSAG 180 PINLSSAHQE APAGLASPDP FFLPPELFPA RDCFWDSEIA PDPLFLDEFQ LLPNSSTVSK 240 LSESFPLGVI GDLSSCSWDV DEFFKDHLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 81 | 135 | 6 | 61 | ATERF1 |
3gcc_A | 4e-21 | 81 | 135 | 6 | 61 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00132880001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142662.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF5 | ||||
Refseq | XP_013752005.1 | 0.0 | ethylene-responsive transcription factor CRF5 | ||||
Swissprot | O82339 | 3e-98 | CRF5_ARATH; Ethylene-responsive transcription factor CRF5 | ||||
TrEMBL | M4CK14 | 0.0 | M4CK14_BRARP; Uncharacterized protein | ||||
STRING | Bra004548.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2578 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46310.1 | 7e-95 | cytokinin response factor 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 106454431 |
Publications ? help Back to Top | |||
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