PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132845001
Common NameGSBRNA2T00132845001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 456aa    MW: 52000.3 Da    PI: 5.1677
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132845001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM706.1e-221092362128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknratksgyWkatg 87 
                          ppG rF Pt+   +  +L++kv++kk      i+++d+y+ +Pw L+ +v++    + ewy+F++r+k+ at  +r+ r    g+Wk+t 
  GSBRNA2T00132845001 109 PPGSRFLPTNLGCLRVHLRNKVDKKKSGS---ITTLDLYEDDPWLLD-HVQNdlfPRGEWYYFTPRNKRGATsCTRTVRGRGGGTWKTTS 194
                          9************************9555...9*************8.3433233445*********999874689999999******** PP

                  NAM  88 kdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                           ++++++k++++ g  ++Lv+ k   + +++ t W m+ey l
  GSBRNA2T00132845001 195 GKEPIKDKNNKVEGYVQSLVYNKTdVNGDTKPTGWNMKEYCL 236
                          *********************97634556678********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-27103248IPR003441NAC domain
PROSITE profilePS5100529.175108252IPR003441NAC domain
PfamPF023652.8E-13109236IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEKMNRDHQS KPKVDESSSK SNYVLGREEG FEEGSSSSSH SHVNNLQEQQ RLMMLRSQGM  60
PRPPALNQHV NHMYNLEEHQ RRMLHYHRMP HTDHPSSSSI NTVKARVYPP GSRFLPTNLG  120
CLRVHLRNKV DKKKSGSITT LDLYEDDPWL LDHVQNDLFP RGEWYYFTPR NKRGATSCTR  180
TVRGRGGGTW KTTSGKEPIK DKNNKVEGYV QSLVYNKTDV NGDTKPTGWN MKEYCLYKKN  240
QDDLVLCHRK GNLNKIGFAE EVKKNNILSN QVQEEQGAGA NRVDEMRTLE EDHGEATQQQ  300
QEQDAPRVLV PPPPPPHEAT DHGEATRQPQ QQEQDAQVVY IPPHHEGQGL GVEQEDHGDA  360
TQQQQQEQDA PPVLVPPPPP PHEGQDPVLE AMMNDENNFM TRGDEDQQNQ WDDSDLYIDV  420
DELFSEEEMM PMDDILQQPV SQARDVGENQ VIKSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132845001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556272.11e-177NAC domain-containing protein 6-like
TrEMBLM4CK450.0M4CK45_BRARP; Uncharacterized protein
STRINGBra004579.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.11e-22NAC domain containing protein 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]