PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00131207001 | ||||||||
Common Name | GSBRNA2T00131207001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 33446.8 Da PI: 4.6484 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +q+++Le+ Fe ++++ e++++LA++lgL+ rqV vWFqNrRa++k GSBRNA2T00131207001 60 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWK 113 45578899*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.9 | 4.2e-41 | 59 | 151 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl +qvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlEkdy Lk++yd+l+++ ++L++++++L +e GSBRNA2T00131207001 59 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGLLKSQYDSLRHNFDSLRRDNDSLLQE 148 69*************************************************************************************999 PP HD-ZIP_I/II 91 lke 93 +++ GSBRNA2T00131207001 149 ISK 151 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.34E-18 | 52 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-16 | 58 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-15 | 60 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.35E-16 | 60 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 63 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.7E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.7E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-16 | 115 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MMKRLSSSDS MCGLVSNSPD EQSPRGYGGN FQSMLDGYEE DGTIVEEYSG NHHHMGLSEK 60 KRRLRVDQVK ALEKNFELEN KLEPERKTKL AQELGLQPRQ VAVWFQNRRA RWKTKQLEKD 120 YGLLKSQYDS LRHNFDSLRR DNDSLLQEIS KMKGKINGEE EEDNNNVKAT TESDISAVKE 180 EEDPIPSSPP QFLEHSTCFN YRRSFTDLRD LMPNPVVEAG SSDSCDSSAV LNEETSSENG 240 RLTPPPATVA GGSFLQFVKT EDHDEFFSGE EACGGFFSDV QPPSLNWYSA SDHWT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 115 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00131207001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352732 | 1e-155 | AK352732.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013736459.1 | 0.0 | homeobox-leucine zipper protein ATHB-16 isoform X3 | ||||
Swissprot | Q940J1 | 1e-179 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | A0A398AHA2 | 0.0 | A0A398AHA2_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5Z0V2 | 0.0 | A0A3P5Z0V2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D5Q1 | 0.0 | M4D5Q1_BRARP; Uncharacterized protein | ||||
STRING | Bra011808.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-167 | homeobox protein 16 |
Publications ? help Back to Top | |||
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