PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131157001
Common NameGSBRNA2T00131157001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 462aa    MW: 50550.2 Da    PI: 9.4703
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131157001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.23.4e-24208251144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++++ +k+CErH++rgr+rsrk++e
  GSBRNA2T00131157001 208 DPEPGRCRRTDGKKWRCSKDAVPEQKYCERHINRGRHRSRKPVE 251
                          79***************************************998 PP
2QLQ54.63.4e-19144180137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll  iqk
  GSBRNA2T00131157001 144 GPFTLTQWAELEQQALIYKYITANVPVPSSLLISIQK 180
                          59*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-12144180IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-13145179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.884145180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.826208252IPR014977WRC domain
PfamPF088792.2E-20209251IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDLGSVTGNV NGSPGLKELR GSKQDRSGFD GEDCLQQSSK LARTIAEDKH LPSSYAAYSR  60
PMSFHQGIPL TRSASLLSSD SRRQEHMLSF SDKPEAFDFS KYVGLDNNKN SLSPFLHQLP  120
PPYCRSSGGG YGSGGMMMSM QGKGPFTLTQ WAELEQQALI YKYITANVPV PSSLLISIQK  180
SFYPYRSFPP SSFGWGTFHL GFAGGKMDPE PGRCRRTDGK KWRCSKDAVP EQKYCERHIN  240
RGRHRSRKPV EVQPGQTAAS KAVASRNTAS QIPSNRVQNV IYPSNVNLQP KEQRNNDNSP  300
FGFGHVTSSS LLTSSYLDFS SNQEKPSGNH HNQSSWPEEL KSDWTQLSMS IPVASSSPSS  360
TAQDKTALSP LRLDLPIQSQ QETLESARKV NTWIPISWGN SLGGPLGEVL NSTTSSPTLG  420
SSPTGVLQKS TFCSLSNSSS VTSPIADNNR NNNVDYFHYT T*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Detected in young leaf primordium. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:21036927}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131157001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8316600.0JN831660.1 Brassica napus growth-regulating factor 2 (GRF2a1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621763.10.0PREDICTED: growth-regulating factor 2-like
SwissprotQ8L8A80.0GRF2_ARATH; Growth-regulating factor 2
TrEMBLA0A0D3A1690.0A0A0D3A169_BRAOL; Uncharacterized protein
STRINGBo1g003460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-166growth-regulating factor 2
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]