PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00131107001 | ||||||||
Common Name | GSBRNA2T00131107001, LOC106426793 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21882 Da PI: 7.0789 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g GSBRNA2T00131107001 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVYYLRG 77 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.748 | 28 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 28 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-12 | 29 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 29 | 86 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.08E-26 | 29 | 87 | No hit | No description |
PRINTS | PR00367 | 5.5E-9 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
METARDVAAA VPASTVASAA ATRKREKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST 60 PEAAARAYDT AVYYLRGPSA RLNFPELLAG VTVEGGNGGG DMSAAYIRRK AAEVGAQVDA 120 LEAAGGNRHH HHHHQQQQQQ RGSHEYVDDD HSLNHSDYRL NDGHNECSSK EEFKRCNGSW 180 EAVDLNKLPD PETSDDD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-15 | 29 | 85 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.16673 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00131107001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC232512 | 0.0 | AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013722978.1 | 1e-146 | ethylene-responsive transcription factor RAP2-10 | ||||
Refseq | XP_022569284.1 | 1e-146 | ethylene-responsive transcription factor RAP2-10-like | ||||
Swissprot | Q9SW63 | 1e-90 | RA210_ARATH; Ethylene-responsive transcription factor RAP2-10 | ||||
TrEMBL | A0A3P6FQ84 | 1e-144 | A0A3P6FQ84_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g004940.1 | 1e-144 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36900.1 | 8e-84 | related to AP2 10 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106426793 |
Publications ? help Back to Top | |||
---|---|---|---|
|