PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00131056001

Common Name

GSBRNA2T00131056001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BES1

Protein Properties

Length: 304aa MW: 32997.8 Da PI: 8.8894

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00131056001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	203.9	4.8e-63	10	143	2	145
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 ++gr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+ve+DGt yrkg+kp ++ s++ GSBRNA2T00131056001 10 SAGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEEDGTIYRKGFKPS--------PTNFSTN 91 79**********************************************************************9........6778888 PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 ss+q s++ssa++sp++sy+ sp sssfpsps++d +s++ llp+l++ ++ GSBRNA2T00131056001 92 SSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDANSSS--YLLLPFLHNIAS 143 88899999***************************776..899999998866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.0E-57	11	128	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MAAGGGGSSS AGRTPTWKER ENNKKRERRR RAITAKIYSG LRAQGNYKLP KHCDNNEVLK 60 ALCLEAGWIV EEDGTIYRKG FKPSPTNFST NSSIQPSPQS SAFPSPAPSY HGSPVSSSFP 120 SPSRYDANSS SYLLLPFLHN IASSIPSNLP PLRISNSAPV TPPLSSPTSR GSKRKLTTEQ 180 LPNGGSLLRH PLFAISAPSS PTRRGGHQTP PTIPECDESV EDSVEDSGRW ISFQSTAPPS 240 PTFNLVQQTS MEIDMKRPEW GMNARGSEFE FENGTVKPWE GEMIHEVGVE DLELTLGGTK 300 TRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	5e-26	13	93	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	5e-26	13	93	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	5e-26	13	93	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	5e-26	13	93	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11613	0.0	leaf\| root\| seed\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00131056001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050394	2e-68	AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
GenBank	AY097357	2e-68	AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596182.1	0.0	PREDICTED: BES1/BZR1 homolog protein 2
Swissprot	Q94A43	1e-168	BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBL	A0A0D3A1G4	0.0	A0A0D3A1G4_BRAOL; Uncharacterized protein
STRING	Bo1g005400.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11512	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36780.1	5e-82	BES1/BZR1 homolog 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]