PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00130766001 | ||||||||
Common Name | GSBRNA2T00130766001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38312.1 Da PI: 4.9826 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.9 | 2.4e-10 | 277 | 317 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq GSBRNA2T00130766001 277 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 317 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.85 | 267 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-14 | 268 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-12 | 272 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-11 | 273 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-11 | 276 | 321 | No hit | No description |
Pfam | PF00010 | 1.3E-7 | 277 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEAMGEWSNN LGGMYTYATE ETDFMNQLLA SYDHPGTGSS SGTAGGDQQG LYWSLGSNHN 60 HLTVMPEASS FGFSGESSSY SVGNRGYYAA VPPAVEENNH GSMGFRMEDV TINTNSYLVG 120 EETSECDVEK YSSGKTLLPL ETVVENHDDG ESMLQSETTT DHHRSLTGSK KRSRATSTDK 180 NKRSKVGKRG QKGIEMTCDN NNRGEEEEGE KVKRRKSGAM MSRQNSSTTF CSEEESQCPS 240 QDVGGEEDED ASKALNLNGK TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV 300 DISTMLEEAV HYVKFLQLQI KLLSSDDQWM YAPIAFNGMD IGLNLPR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00130766001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189386 | 0.0 | AC189386.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052L10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593795.1 | 0.0 | PREDICTED: transcription factor bHLH85 | ||||
Refseq | XP_013740761.1 | 0.0 | transcription factor bHLH85-like | ||||
Swissprot | Q84WK0 | 0.0 | BH085_ARATH; Transcription factor bHLH85 | ||||
TrEMBL | A0A3P6FU99 | 0.0 | A0A3P6FU99_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g007780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2834 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 1e-171 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Publications ? help Back to Top | |||
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