PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00130073001

Common Name

GSBRNA2T00130073001, LOC106443126

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 194aa MW: 22169.3 Da PI: 6.3028

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00130073001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.8	4.7e-13	75	127	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +++rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++ +l++ ++ + GSBRNA2T00130073001 75 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQILGKLNKATDSND 127 79*************************************99988888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-12	71	135	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.002	73	121	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.1E-10	73	124	No hit	No description
Pfam	PF00170	3.1E-11	75	132	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.59E-12	75	124	No hit	No description
CDD	cd14702	1.15E-18	76	123	No hit	No description
PROSITE pattern	PS00036	0	78	93	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MHPNYDSSSI NNMQQQDYFH LNPYYNNLNP STNNNLNLLS YPQIQEFNNL QSPASNNNST 60 TSDEATEETF VISERKQRRM VSNRESARRS RMRKQRHLDE LLSQVAWLRS ENHQILGKLN 120 KATDSNDLVL QENLILKEEN LELRQVITSM KKLGGAEGGS TSFHGIYCSS SLDHDLDQDF 180 SCITNDPKSH HPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	94	RRSRMRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00130073001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232554	0.0	AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131503.1	1e-142	PREDICTED: basic leucine zipper 43-like
Refseq	XP_013740176.1	1e-142	basic leucine zipper 43
TrEMBL	A0A397ZU97	1e-140	A0A397ZU97_BRACM; Uncharacterized protein
STRING	Bra006324.1-P	1e-132	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10632	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	3e-74	basic leucine-zipper 3

Link Out ? help Back to Top
Entrez Gene	106443126

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]