PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00129660001 | ||||||||
Common Name | GSBRNA2T00129660001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35519.3 Da PI: 4.6606 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+ + +++G g W+ I+++ g++R++k+c++rw +yl GSBRNA2T00129660001 14 KGAWTIEEDKKLISYLHEHGEGGWRDIPQKAGLKRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.8e-14 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++ eE+++++ +++ G++ W+ Iar+++ +Rt++++k++w++ GSBRNA2T00129660001 67 RGEFSYEEEQIIIMLHASRGNK-WSVIARHLP-KRTDNEIKNYWNTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.575 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.70E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.919 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.3E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSRKPCCVGE GLKKGAWTIE EDKKLISYLH EHGEGGWRDI PQKAGLKRCG KSCRLRWANY 60 LKPDIKRGEF SYEEEQIIIM LHASRGNKWS VIARHLPKRT DNEIKNYWNT NLRKRLIDQG 120 NDPLTHKPLA STPEPATPKT SDLQDDSNPK SLPLSSNSCN ILEISNSDET PRNYGSFNSK 180 KLSSTSELLN KVATRAASMG NIISASMEGT LIPSTTLSPP CLNDGLSETS HFQMDEFDID 240 MNFDFNNSEH DFSEFLEQFS NNAAEEADNI IGYDQDLLFS DVSSTRVDED GMTNIPGWSN 300 YLLDDSEFSY DTNQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Primarily present around the midvein in seedlings. Accumulates gradually in expanding leaves, reaching a maximum in fully expanded leaves in the primary vein. {ECO:0000269|PubMed:18042203}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both vegetative and generative organs. Mostly present in seedlings, inflorescences, roots and stems, and, to a lower extent, in leaves (in midvein and trichomes) and siliques. {ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23115560, ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00129660001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by gibberellic acid (GA), jasmonic acid (JA, MeJA), nitrogen starvation and UV LIGHT treatment. Transiently repressed by salicylic acid (SA). Accumulates upon mechanical stimuli (e.g. wounding) in inflorescence. Down-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB702691 | 0.0 | AB702691.1 Brassica oleracea var. viridis mRNA for Myb domain protein 29 (BoMyb29), complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131005.1 | 0.0 | PREDICTED: transcription factor MYB29-like | ||||
Refseq | XP_022566456.1 | 0.0 | transcription factor MYB29-like | ||||
Swissprot | Q9FLR1 | 1e-155 | MYB29_ARATH; Transcription factor MYB29 | ||||
TrEMBL | A0A397ZR80 | 0.0 | A0A397ZR80_BRACM; Uncharacterized protein | ||||
TrEMBL | C5HYG2 | 0.0 | C5HYG2_BRARP; MYB domain protein 29-1 | ||||
TrEMBL | S4TAZ2 | 0.0 | S4TAZ2_BRAJU; R2R3 DNA binding transcription factor MYB29-1 | ||||
STRING | Bra005949.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3787 | 18 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07690.1 | 1e-157 | myb domain protein 29 |