PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00128889001
Common NameGSBRNA2T00128889001, LOC106403031
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 201aa    MW: 22479.3 Da    PI: 8.5195
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00128889001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1863117256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L  rq+ vWFqNrRa+ k
  GSBRNA2T00128889001  63 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSK 117
                          78889************************************************98 PP
2HD-ZIP_I/II1192.5e-3863151189
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  GSBRNA2T00128889001  63 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELRA 151
                          69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1842117IPR009057Homeodomain-like
SuperFamilySSF466891.75E-1847120IPR009057Homeodomain-like
PROSITE profilePS5007117.13559119IPR001356Homeobox domain
SMARTSM003892.4E-1761123IPR001356Homeobox domain
CDDcd000861.61E-1562120No hitNo description
PfamPF000466.5E-1663117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PfamPF021832.5E-9119152IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.9E-20119162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAILPENSSH LDLTISVPGF SSSPPSDEGS GGGREQLKLD MNQLPSSSED NEELSHGGSA  60
PPRKKLRLTR EQSRLLEDSF RQNHTLNPKQ KEALAKHLML RPRQIEVWFQ NRRARSKLKQ  120
TEMECEYLKR WFGSLTEQNH RLHREVEELR AMNVGPTTVT SASSLTMCPR CERVTTAASA  180
ASPSLAIPSQ KTLPPQESEH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00128889001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534480.0AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013699325.11e-145homeobox-leucine zipper protein ATHB-17 isoform X2
SwissprotQ8S9N61e-122ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLM4E7Y21e-136M4E7Y2_BRARP; Uncharacterized protein
STRINGBra024888.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-104homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]