PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00127322001

Common Name

GSBRNA2T00127322001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 341aa MW: 35831.1 Da PI: 6.6498

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00127322001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	3.9e-11	155	200	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq GSBRNA2T00127322001 155 HSIAERLRRERIAERMKGLQELVPNgN------KTDKASMLDEIIDYVKFLQ 200 99*********************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-16	148	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.71E-13	148	204	No hit	No description
PROSITE profile	PS50888	16.984	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-15	152	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	155	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-13	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MMNSSLLTPS SSSHVQTPTT TFDHEDFLDQ IFASSPWPSD EAHPPPPPPP SSDGFVDSRH 60 QQIMMMPLPS HHQNEVVDGS SVHSLYNGFS AGGSLPFHIP QGTVGGMMNQ QGQALTQKQT 120 QPQVSASIAT GGTAAAPPQS RTKVRARRGQ ATDPHSIAER LRRERIAERM KGLQELVPNG 180 NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGGASNSQI SEENTSSAVA GGNQATGNSN 240 DSLTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN TLIPGAAGGV 300 GGHPSSPNLS GMTVQSTNKV TLSGNGVTEG SPPLVVKEAV *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	164	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13128	0.0	leaf\| microspore\| microspore-derived embryo\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00127322001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176370	1e-131	AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBank	AK176390	1e-131	AK176390.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-10-C06.
GenBank	BT026512	1e-131	BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013708679.2	0.0	transcription factor bHLH66-like
Swissprot	Q9ZUG9	1e-163	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D3DVP0	0.0	A0A0D3DVP0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G063	0.0	A0A3P6G063_BRAOL; Uncharacterized protein
STRING	Bo8g099910.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-132	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]