PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127299001
Common NameGSBRNA2T00127299001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 911aa    MW: 102604 Da    PI: 9.5542
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127299001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.1e-101197195
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                         ff +l+p   + ++ l++p +f++++ +g +  + t +l++ +s  +W+vk+      ++ +l++GW+eF  a+ L++g  ++ +++g++ f
  GSBRNA2T00127299001 11 FFHTLVPGCGFHTH-LIIPLDFFSKYiEGRSV-DNTAQLKSdSSDITWQVKM------SGPILSDGWREFTVAHSLQAGHLILVRYEGDMVF 94
                         66677776677777.***********844443.458888885777*******......4578*************************99998 PP

                         ..EEE CS
                   B3 91 elvvk 95
                           +v+
  GSBRNA2T00127299001 95 --HVS 97
                         ..654 PP
2B366.63.7e-211542381197
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          l    l+lp +f++++g+  +es +++l d +grsW++ l+++ +s+++++t+GW++F+++ng ++g f++Fkl+g+ +++lv++++
  GSBRNA2T00127299001 154 LLIYTLYLPQHFTSSNGLT-RESHKIVLIDGEGRSWTLDLRFNASSDTFYMTRGWRSFCEENGQEAGGFFTFKLVGN-GETLVLSFR 238
                          555679**********998.5677***************************************************95.444555554 PP
3B355.21.3e-17284375499
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++d l+ +r++lpk+f+ e +++k++  t+ l  ++  +W+ kl ++ ++gr+ l++GW  F++ang k g++v+++ ++ ++++++
  GSBRNA2T00127299001 284 IKIRPDILTCNRMRLPKQFVMESNMNKPG--TIYLLGKDDTKWTTKL-VKERDGRMKLGSGWTVFAEANGFKPGESVTLESVW-EDGTPM 369
                          567899999**********9888888655..8***************.67788889************************888.9999** PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          ++++r+
  GSBRNA2T00127299001 370 IRFLRT 375
                          *99986 PP
4B334.73.2e-11413496593
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          l+p+dv +   l++p + +e++g +k +  ++t+  e+  + + +l    ++g++ l++GW eF++ang+k g++++++++++ +++ +
  GSBRNA2T00127299001 413 LLPEDVKAG-VLIIPSQLLEANGVNKLG--KITILGEKKMELSGYL--LSRGGTVALENGWGEFCEANGVKLGESFTLEFIKKPDKTTH 496
                          566666665.5***********988655..6888887777776666..899999*************************9988666555 PP
5B347.82.6e-155216021197
                          HHTT-EE--HHH.HTT.---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          + s+ l++p  f+++h +g +e  +t +l++  ++  +W+vk+  + ++    lt+GWkeF+ a++L++gD+v+F+ ++++ f  ++++f
  GSBRNA2T00127299001 521 FHSH-LTIPVAFCSKHvEGRNEHMTTAKLRSdiSDDITWKVKI--EDGR---KLTDGWKEFALAHDLRVGDIVIFRQEKDMAF--HITLF 602
                          4555.************66667778999999656669******..4444...39**********************7776777..77776 PP
6B372.64.7e-23654739593
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           +++++l+ +rl+lpk+f++e+g++++++ +++l++e+grsW+++l  + + g++ +t+GWk+F++a gL++g  ++Fkl++r ++  +
  GSBRNA2T00127299001 654 NVRPSSLRDNRLTLPKRFVRENGLETRCG-EIVLMNEKGRSWNLNLARKDSCGTMSITGGWKSFCNASGLRAGSLFTFKLIKRGDT--L 739
                          56789999****************99887.****************77777777***************************98655..3 PP
7B354.52.1e-17811903498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          +l++sdv + +rl +p +f++ hg++ke  +++ + d++g +W+  l+  + +++r+ l +GWkeF kan ++ g++++ kl+++ ++++
  GSBRNA2T00127299001 811 TLKTSDVKN-SRLFIPVNFTRLHGINKE--TEMAMLDKNGVKWSTSLRSeTSGGDRIRLVGGWKEFFKANCVEIGESIIVKLIWEGDKSC 897
                          455666665.57************9965..58***************885666666****************************988888 PP

                          EEEEE- CS
                   B3  93 vvkvfr 98 
                          v+ +++
  GSBRNA2T00127299001 898 VLEFYS 903
                          877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-12897IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-13897IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-11997No hitNo description
PROSITE profilePS508639.43210102IPR003340B3 DNA binding domain
SMARTSM010191.3E-1611102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-22137240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-22138240IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-19144239No hitNo description
PROSITE profilePS5086316.13144240IPR003340B3 DNA binding domain
SMARTSM010192.8E-27145241IPR003340B3 DNA binding domain
PfamPF023629.2E-19150238IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-18271380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18277378IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.2E-23281376IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155281376IPR003340B3 DNA binding domain
PfamPF023626.8E-16282374IPR003340B3 DNA binding domain
CDDcd100172.01E-16289374No hitNo description
Gene3DG3DSA:2.40.330.101.5E-12401491IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-13406490IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-7407491No hitNo description
SMARTSM010191.4E-12408503IPR003340B3 DNA binding domain
PROSITE profilePS508639.827408503IPR003340B3 DNA binding domain
PfamPF023621.7E-9411493IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266510605IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-17512612IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-14512602No hitNo description
SMARTSM010192.8E-20513605IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-21517617IPR015300DNA-binding pseudobarrel domain
PfamPF023628.8E-11522599IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-22647742IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-20649742IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-29650746IPR003340B3 DNA binding domain
PROSITE profilePS5086315.721650746IPR003340B3 DNA binding domain
CDDcd100171.08E-20650742No hitNo description
PfamPF023623.9E-21654738IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-17799898IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-19803897IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-15807901No hitNo description
SMARTSM010191.1E-21807905IPR003340B3 DNA binding domain
PROSITE profilePS5086313.69807905IPR003340B3 DNA binding domain
PfamPF023626.2E-16807904IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MAKSTLLHPQ FFHTLVPGCG FHTHLIIPLD FFSKYIEGRS VDNTAQLKSD SSDITWQVKM  60
SGPILSDGWR EFTVAHSLQA GHLILVRYEG DMVFHVSHCL EIPSNNNKHS HPRTDVDDLP  120
NKKKRAKTNS NETEADSSSL DNSCFVATVT SFNLLIYTLY LPQHFTSSNG LTRESHKIVL  180
IDGEGRSWTL DLRFNASSDT FYMTRGWRSF CEENGQEAGG FFTFKLVGNG ETLVLSFRPT  240
ESTSKQQEYF KHIKKQSLYI DPSNNGDNSS KDSSPSSQNR LVTIKIRPDI LTCNRMRLPK  300
QFVMESNMNK PGTIYLLGKD DTKWTTKLVK ERDGRMKLGS GWTVFAEANG FKPGESVTLE  360
SVWEDGTPMI RFLRTGSNSS KDTKKESVSM EVIEPRTSGS SSEIHDRFVT LTLLPEDVKA  420
GVLIIPSQLL EANGVNKLGK ITILGEKKME LSGYLLSRGG TVALENGWGE FCEANGVKLG  480
ESFTLEFIKK PDKTTHLEGK RSRNLENMVS QHFFQPLLPG FHSHLTIPVA FCSKHVEGRN  540
EHMTTAKLRS DISDDITWKV KIEDGRKLTD GWKEFALAHD LRVGDIVIFR QEKDMAFHIT  600
LFGPSCCEIQ YGSCLKKKNK LKLSKIQNKK KVKKKNKKKY VESSLLDPSC FVNNVRPSSL  660
RDNRLTLPKR FVRENGLETR CGEIVLMNEK GRSWNLNLAR KDSCGTMSIT GGWKSFCNAS  720
GLRAGSLFTF KLIKRGDTLV LLKSPSSIKS AEEDCLEAYE IEPDREEASN QDEKPRLLWK  780
ASTSSPSQKK PRSLWKASTS SPSQNLFLTL TLKTSDVKNS RLFIPVNFTR LHGINKETEM  840
AMLDKNGVKW STSLRSETSG GDRIRLVGGW KEFFKANCVE IGESIIVKLI WEGDKSCVLE  900
FYSKVKQETK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615622KKKNKLKL
2615630KKKNKLKLSKIQNKKK
3629637KKVKKKNKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127299001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547841.10.0B3 domain-containing protein REM13-like
TrEMBLA0A3P6GP010.0A0A3P6GP01_BRAOL; Uncharacterized protein
STRINGBo8g099630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-107B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]