PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126929001
Common NameGSBRNA2T00126929001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 367aa    MW: 41916.7 Da    PI: 5.0249
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126929001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55e-34131052102
                          HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          Fl+k+ye+++d++ ++++sws ++++sf+v+++ ef++++Lpk+Fkh+nfaSF+RQLn+YgF+k + e+         weF+++ F +g+
  GSBRNA2T00126929001  13 FLTKTYEMVDDSSSDSIVSWSpQSNKSFIVWNPPEFSRDLLPKFFKHNNFASFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQ 93 
                          9********************9999***************************************99988.........************ PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                           +l+++i+r+k 
  GSBRNA2T00126929001  94 PHLMKNIHRRKP 105
                          *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.7E-609103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-339103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.7E-3013103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF114147.9E-6127174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDESNHGGSL PPFLTKTYEM VDDSSSDSIV SWSPQSNKSF IVWNPPEFSR DLLPKFFKHN  60
NFASFIRQLN TYGFRKADPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS SPSLQPHPLT  120
DSERQRMNDQ IQRLTKEKEV LLEELHKQEK EREMFQQQVK ELKDQLQHME KRQKTMASFV  180
SQVLEKPELA LNLSPCLQET NERKRRFPRI GLEGSTSPSS QARELQVEQL ESSIAVWENL  240
VSEDSSESLG QETRSMMTLD VDESSTCPES PPLPCIQLSI DTCPTSPRTI DMNSEPDASK  300
EQTIVAPPPP GAGGNDVFWQ QLLTENPGST GQKEVQSERK DDKAEKCWWD SRNVNTLTEQ  360
LGHLTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-23910325129Heat shock factor protein 1
5d5v_B4e-23910325129Heat shock factor protein 1
5d5v_D4e-23910325129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126929001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4352410.0HQ435241.1 Brassica napus cultivar Deyou No.5 heat shock transcription factor A4a (HsfA4a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022545644.10.0heat stress transcription factor A-4a-like isoform X2
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A3P6BR830.0A0A3P6BR83_BRACM; Uncharacterized protein
STRINGBra020988.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-165heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]