PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126841001
Common NameGSBRNA2T00126841001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LSD
Protein Properties Length: 155aa    MW: 16944.3 Da    PI: 4.6936
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126841001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.41.2e-136690125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         Cg+Cr lLsYPrG ++V+C++C+tV
  GSBRNA2T00126841001 66 CGSCRRLLSYPRGTKHVKCSCCQTV 90
                         ************************9 PP
2zf-LSD143.64.7e-14104128125
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                          C++C  lL+YP+GApsVRC++C  V
  GSBRNA2T00126841001 104 CSNCELLLMYPYGAPSVRCSSCKSV 128
                          **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.1E-186393IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-116690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.0E-11101129IPR005735Zinc finger, LSD1-type
PfamPF069439.8E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MIAEAETKDT MEEIQTQKKE EDEDEEEGPP PGWESTVLPP PPIAAVTTAV NSTTAAEISE  60
MAQMVCGSCR RLLSYPRGTK HVKCSCCQTV NLVLEAYQVG QVKCSNCELL LMYPYGAPSV  120
RCSSCKSVTD IREDNKRPPW SVLQGPLKTF SSVR*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126841001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108490.15e-94PREDICTED: protein LOL2
SwissprotO654266e-66LOL2_ARATH; Protein LOL2
TrEMBLA0A397YBR32e-93A0A397YBR3_BRACM; Uncharacterized protein
STRINGBra020902.1-P6e-86(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.19e-60lsd one like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]