PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126537001
Common NameGSBRNA2T00126537001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family S1Fa-like
Protein Properties Length: 759aa    MW: 82257.5 Da    PI: 7.8962
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126537001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA124.63.1e-39691758370
                 S1FA   3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                          +a++ea+GlnPGlivllv+gg+l+vflv+n +lyv+aqknlPP+kkkPvskkklkreklkqGv+vPGe
  GSBRNA2T00126537001 691 KAAAEARGLNPGLIVLLVIGGPLVVFLVANIVLYVHAQKNLPPKKKKPVSKKKLKREKLKQGVSVPGE 758
                          7899***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.12E-5924251IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF001391.7E-5825252IPR001220Legume lectin domain
CDDcd068991.49E-7525248No hitNo description
Gene3DG3DSA:2.60.120.2001.9E-6626251IPR013320Concanavalin A-like lectin/glucanase domain
PROSITE patternPS003070134140IPR019825Legume lectin, beta chain, Mn/Ca-binding site
SuperFamilySSF561129.17E-84320647IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.204.2E-29322415No hitNo description
PfamPF000699.6E-54338611IPR000719Protein kinase domain
SMARTSM002202.9E-42338613IPR000719Protein kinase domain
PROSITE profilePS5001139.651338622IPR000719Protein kinase domain
PROSITE patternPS001070344367IPR017441Protein kinase, ATP binding site
CDDcd140669.44E-93344613No hitNo description
Gene3DG3DSA:1.10.510.109.6E-47417615No hitNo description
PROSITE patternPS001080458470IPR008271Serine/threonine-protein kinase, active site
PfamPF046891.8E-34694758IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MSFLPSLFSV SLLLCFFYSL NEATTEFDFS TLAISNLKLL GDARLSNGIV SLTRDLSVPN  60
SGAGKVLYAN PIRFRQPGTH YPTSFSTFFS FSITNINPSS IGGGLAFVIA PDGNTIGAAG  120
GSLGLAAPAG SKFVAVEFDT LMDVDFKDIN SNHVGFDVNG VVSSVSGDLG TVDIDLKSGN  180
TVNSWIEYDG LSRVFNVSVS YSNLKPKSPV LSFPLDLDRY VNDFMFVGFS GSTQGSTESH  240
SIEWWSFRSS FGSGPGSGSG SGPSPPTANL VNPKANSVNS PPPIASQPSS SAVPISSLSK  300
TPPSSSCRNH LHDSFASEII KAPKEFSYKE LKAATRSFNE SRSIGHGAFG VVYRGVLPET  360
GDVVAVKRCS HSSQDKKNEF MSELSIIGSL RHRNLVRLQG WCHERGEILL VYDLMPNGSL  420
DKALFESRFP LPWDHRKKIL LGVASALAYL HRECENQVIH RDVKSSNIML DENFNAKLGD  480
FGLARQIEHD KSPEATVAAG TMGYLAPEYL LTGRATEKTD VFSYGAVVLE VVTGRRPIEK  540
DLNAQRQNVG ANPNLVEWVW GLYKEGKVTG AADSRLEGKF DEGEMWRVMV VGLACSHPDP  600
EARPTMRSVV QMLIGEADVP VVPKSRPTMS FSTSHLLLSL QDTLSDCNTL ALNSSRSSSW  660
SVPEHNVMIR GDDDHMRFRI VFMDGEDFAR KAAAEARGLN PGLIVLLVIG GPLVVFLVAN  720
IVLYVHAQKN LPPKKKKPVS KKKLKREKLK QGVSVPGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cth_A3e-913246323306Concanavalin A-like lectin protein kinase family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126537001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613776.10.0PREDICTED: L-type lectin-domain containing receptor kinase VIII.1
RefseqXP_013613778.10.0PREDICTED: L-type lectin-domain containing receptor kinase VIII.1
RefseqXP_013666974.10.0L-type lectin-domain containing receptor kinase VIII.1-like
RefseqXP_022556687.10.0L-type lectin-domain containing receptor kinase VIII.1-like
SwissprotQ9LFH90.0LRK81_ARATH; L-type lectin-domain containing receptor kinase VIII.1
TrEMBLA0A3P6C7660.0A0A3P6C766_BRACM; Uncharacterized protein
STRINGBo00703s150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM376923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.27e-17WRKY family protein
Publications ? help Back to Top
  1. Nühse TS,Stensballe A,Jensen ON,Peck SC
    Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.
    Plant Cell, 2004. 16(9): p. 2394-405
    [PMID:15308754]
  2. Bouwmeester K,Govers F
    Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles.
    J. Exp. Bot., 2009. 60(15): p. 4383-96
    [PMID:19773388]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Eggermont L,Verstraeten B,Van Damme EJM
    Genome-Wide Screening for Lectin Motifs in Arabidopsis thaliana.
    Plant Genome, 2018.
    [PMID:28724081]