PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00126204001 | ||||||||
Common Name | GSBRNA2T00126204001, LOC106449205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 265aa MW: 29773.6 Da PI: 6.2522 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.7 | 3.7e-26 | 143 | 203 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r +edp ++ +tY+++H+++ GSBRNA2T00126204001 143 DDNHTWRKYGQKEILGSKFPRAYYRCTHEkvyKCPAKKQVQRLDEDPYTFCVTYRSSHTCH 203 8***************************99999*************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-26 | 137 | 203 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-24 | 140 | 204 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-32 | 142 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-23 | 143 | 203 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.852 | 143 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence Send to blast |
MEEIMSMIFS GINLVKELEF SLTAQESPES LSTSLGSVST LFGGANERLK ILLARRNAYV 60 LTLPEPKPVP MSGLDQMMMQ QIEYDLMQDY SLREGVMQGV KNIDSGPSCG FSTPRPRRRK 120 KDEEEETVFV AAARMGNMDT PPDDNHTWRK YGQKEILGSK FPRAYYRCTH EKVYKCPAKK 180 QVQRLDEDPY TFCVTYRSSH TCHFFTTSPI SSTTDTTTTD GHYGSTVVKM AEALFGNLDS 240 VVPFGEPYFN YRSLFHGRGG DGDT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 9e-20 | 143 | 202 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 115 | 119 | PRRRK |
2 | 116 | 121 | RRRKKD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00126204001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013746459.1 | 0.0 | WRKY transcription factor 55 | ||||
Swissprot | Q9SHB5 | 2e-82 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | A0A397ZPX7 | 0.0 | A0A397ZPX7_BRACM; Uncharacterized protein | ||||
STRING | Bra014693.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-66 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106449205 |
Publications ? help Back to Top | |||
---|---|---|---|
|