PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126134001
Common NameGSBRNA2T00126134001, LOC106406247
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 223aa    MW: 24083.1 Da    PI: 7.223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126134001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-0585107123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ CgksF++   L  H  +H
  GSBRNA2T00126134001  85 YKCSVCGKSFPSYQALGGHKTSH 107
                          9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.93E-1084107No hitNo description
Gene3DG3DSA:3.30.160.602.6E-485107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78385112IPR007087Zinc finger, C2H2
SMARTSM003550.002285107IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-1485109IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576678.93E-10143170No hitNo description
PfamPF139126.4E-12147172IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12148170IPR007087Zinc finger, C2H2
SMARTSM003550.35148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MALDTLNSPN STTTAPSPFL TEPENLEPWT KRKRTKRHRI DDQSNPPSEE EYFALCLLML  60
ARGSSDDDQH SSPPHPPSDH HHRDYKCSVC GKSFPSYQAL GGHKTSHRKP VSNNNNNNHD  120
GHNNSGNGSI TNNGNISNGL IGHSGKTHKC SICFKSFPSG QALGGHKRCH YDGGNGNSNI  180
NGNGSNNHGF DLNLPADQVF EVSCDDTLGK SQLSGEETKS PL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126134001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013702325.11e-163zinc finger protein AZF1 isoform X1
SwissprotQ9SSW13e-63AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A3P6EYY81e-162A0A3P6EYY8_BRAOL; Uncharacterized protein
STRINGBo1g081350.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-67C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]