PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00125806001 | ||||||||
Common Name | GSBRNA2T00125806001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 236aa MW: 27381.2 Da PI: 5.1316 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.5 | 1.7e-12 | 84 | 182 | 6 | 114 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +F+P+d+ + ++yLk+kv g+++++ + +e+ +i+++ P+d+p+ +e+ew+ +++r + ++r W g+d+ v++ GSBRNA2T00125806001 84 KFRPSDDMMAKYYLKNKVLGQPMKALIIPEECdHIFSIPPRDFPRY--PRETEWHCYCRRPNGP-----ESR----NLWTRVGEDTIVFD 162 8************************877788866**********43..4789******986642.....344....37************ PP NAM 95 kkgelvglkktLvfykgrap 114 +g+ vg+k+t ++ +++++ GSBRNA2T00125806001 163 PRGNGVGIKRTYALTEQKEE 182 ***********999965443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.49 | 79 | 223 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-6 | 84 | 204 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.1E-15 | 84 | 222 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MADKKYLDPN PPLENRTVRS FKRIAIEQDS ESEPEFKKQN LKELQTDECN ITHKAHTSAK 60 IDDKVKTDPK MVEPFIKAFS TLKKFRPSDD MMAKYYLKNK VLGQPMKALI IPEECDHIFS 120 IPPRDFPRYP RETEWHCYCR RPNGPESRNL WTRVGEDTIV FDPRGNGVGI KRTYALTEQK 180 EEPDVISLPG EIEPPREEWF IEEISLPLSV ADTDLVFCHL ILNKIDKEEA YVVDD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00125806001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589340.1 | 1e-101 | PREDICTED: uncharacterized protein LOC106297688 | ||||
TrEMBL | A0A3N6RUN2 | 1e-159 | A0A3N6RUN2_BRACR; Uncharacterized protein | ||||
STRING | Bo1g071020.1 | 1e-146 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56520.1 | 7e-42 | NAC family protein |
Publications ? help Back to Top | |||
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